Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a14
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038)                 30   1.5  
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   2.0  
SB_18522| Best HMM Match : DUF960 (HMM E-Value=8.2)                    28   8.0  

>SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038)
          Length = 657

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 404 EFIRWDRAYHCESDCGHNLYRYTLYKNIGYVHNVYCYITIYTC 532
           E I     Y    DC  ++Y+Y+LY+ +     + C++   TC
Sbjct: 556 EAITGHAQYVALDDCHPHVYQYSLYRKLARAFGLACHVLEITC 598


>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 928

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 679 CRYCDKRF-KLLHLINDEFKPHSCNR 605
           CRYCDKRF +  H +  EFK HS  R
Sbjct: 537 CRYCDKRFSQPSHRVQHEFK-HSGER 561


>SB_18522| Best HMM Match : DUF960 (HMM E-Value=8.2)
          Length = 368

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 572 QLHPPYCWS*V--LEHRCILLYNNIHC 498
           +LHPP CW+    + +  +  Y+++HC
Sbjct: 54  RLHPPQCWATTRRMLYHSLFTYSSLHC 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,971,447
Number of Sequences: 59808
Number of extensions: 371688
Number of successful extensions: 823
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)