Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11p21
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2180| Best HMM Match : DUF293 (HMM E-Value=4.2) 57 1e-08
SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092) 32 0.54
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12) 30 1.7
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) 30 1.7
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12) 29 5.1
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_43254| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08) 28 6.7
SB_46507| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_2180| Best HMM Match : DUF293 (HMM E-Value=4.2)
Length = 289
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 9/76 (11%)
Frame = +1
Query: 292 LVYSEFGDPLHVVKY------RECQVPPL---GSQEVLVRMLAAPVNPADINTIQGKYPV 444
++Y E+GDP V++ R + G V V+M+AAPVNP+DIN IQG Y +
Sbjct: 38 VMYKEYGDPGKVLRLFLIDWLRSLEFVDREVSGPSSVGVQMVAAPVNPSDINMIQGSYAI 97
Query: 445 KVNLPCVPGNEGVGIV 492
K LP V GNEG G V
Sbjct: 98 KPALPAVGGNEGCGQV 113
>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1
Query: 313 DPLHVVKYRECQVPPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPGNEGVGIV 492
+P + +V P + EV +++LA V D T+ G P + PC+ G+EG GIV
Sbjct: 11 EPKKPLSIETIEVAPPKAHEVRIKILATGVCHTDAYTLSGVDPEGL-FPCILGHEGGGIV 69
Query: 493 E 495
E
Sbjct: 70 E 70
>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 370 EVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPGNEGVGIV 492
+VL+++ AA V+P + G Y LP PGN G GI+
Sbjct: 289 QVLIKLSAASVSPVETYIRSGSYARLPELPFTPGNYGAGII 329
>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
Length = 676
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 361 GSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPGNEGVGIV 492
G +EVLV+ A +N DIN G+Y P G EG+G V
Sbjct: 37 GPEEVLVKTRYAGINATDINHTAGRYKPWNKPPFDAGLEGLGEV 80
>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
Length = 316
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +1
Query: 352 PPLGSQEVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPGNEGVGIVEE 498
P L EVL+R+ +N AD +G YP + G E GIVEE
Sbjct: 49 PKLKETEVLIRVHFTALNRADTLQRKGSYPPPPGESEILGLEVSGIVEE 97
>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
Length = 562
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 370 EVLVRMLAAPVNPADINTIQGKYPVKVNLPCVPGNEGVGIVEE 498
+V+V++ A V AD+ QG +P+ P V G E G+VEE
Sbjct: 67 QVVVKVHACGVTFADLLQRQGHFPLAPKPPYVCGFECSGVVEE 109
>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
Length = 515
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 282 YSVSGV*RIRRSIACCKVQGMPSPTAG---EPRSV 377
Y V+ R I CK QG PSP+AG PRSV
Sbjct: 255 YQVNECIRFNDVIFLCKSQGPPSPSAGPTKPPRSV 289
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -3
Query: 422 VFMSAGLTGAASMRTNTSWLPSGGTWHSL 336
V + G++G ++ SW+P TW L
Sbjct: 245 VILFGGMSGGRTITDTVSWIPGANTWSKL 273
>SB_43254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 538 VGGKSSLEMLRHLQHSGCMVTYGGMSR 618
V +L+MLRH+ H+G V+Y +R
Sbjct: 152 VSSAGNLQMLRHMVHNGACVSYRDANR 178
>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
Length = 1057
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 313 RRIRYTPDTL*ISRRYDSHVLVLKLRHVYV 224
RR RYT D + + +YD + + RH YV
Sbjct: 116 RRSRYTHDAIAVQSQYDYGTVTSRSRHSYV 145
>SB_46507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 436 YPVKVNLPCVPGNEGVGIVEEEKKIDKPSLALNCVGGKSSLEMLRHLQH 582
+P+ + L +P + G++ EE + D+PS ++ + GK L+ L H
Sbjct: 20 FPLLIALHHIPLSPA-GVIAEEARTDRPSQQMHILNGKWRLKRYFLLTH 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,912,508
Number of Sequences: 59808
Number of extensions: 482849
Number of successful extensions: 1203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -