Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p18
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...   146   3e-36
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    29   0.85 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   1.1  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   4.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  

>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score =  146 bits (354), Expect = 3e-36
 Identities = 67/159 (42%), Positives = 102/159 (64%), Gaps = 8/159 (5%)
 Frame = +3

Query: 240 LDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKV 419
           L +++C++VDE D  +   TK+ECH +      LLHRAFS+F+F+++  + LQ+R+ +K+
Sbjct: 17  LMEEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKI 76

Query: 420 TYPDYYTNACCSHPL--------YIDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMT 575
           T+P  +TN CCSHPL         + E  E +  AA+R++ HELGI    +  + F F+T
Sbjct: 77  TFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLT 136

Query: 576 RVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEY 692
           R+HY  P  G WGEHEID+ILFF+  V++  N +E+  Y
Sbjct: 137 RIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAY 175


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 255 CLLVDEKDNFIGTATKRECHKVGPDGDVLLH 347
           C++VDE DN I +A  R      PDGDV  H
Sbjct: 34  CIIVDENDNVIMSAGNRV-----PDGDVTQH 59


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/69 (33%), Positives = 35/69 (50%)
 Frame = -3

Query: 343 SSTSPSGPTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPSLSRVAGFTGSEAKNL 164
           SS+S S  +   S   +VP+  S SS+    S S +S+ ++SRPS S  +  T   +   
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS-SSSSFITTMSSSTF 249

Query: 163 FSTLRVLHS 137
            ST+ V  S
Sbjct: 250 ISTVTVTPS 258


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 561 FTFMTRVHYHDPGDGVW 611
           +TFMT  H+ +P +GVW
Sbjct: 543 WTFMTVQHWAEPPEGVW 559


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -3

Query: 277 SFSSTSRQISLSKASAWANSRPSLSRVAGFTGSEAKNLFSTLRVLHSDLVSFLTNIF 107
           S S   +++SLS +   +  RP  + +  FTGSE  +LF  L +    L+ FL+  F
Sbjct: 76  SLSINPKKLSLSFSFPLSQKRPFPNFLHPFTGSEL-SLFRCLLLFFFFLLFFLSFSF 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,464
Number of Sequences: 5004
Number of extensions: 63069
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)