Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p09
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23063| Best HMM Match : TPR_1 (HMM E-Value=3.1e-07)                 36   0.034
SB_55709| Best HMM Match : PsbI (HMM E-Value=2.4)                      29   3.9  
SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)                      29   3.9  
SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)          27   9.0  
SB_3026| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  

>SB_23063| Best HMM Match : TPR_1 (HMM E-Value=3.1e-07)
          Length = 374

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 325 LMAVAITSGVVVVYRMFYAPYVKRKRYQVAEEWANKIIEYEEQTEETKASISTSQIS 495
           ++ V  T  + + Y      Y+K+K+   AE +A+K  EY E  EE K+ +    +S
Sbjct: 267 MIGVVSTEELCIAYTFVARYYLKKKKLMEAEVYAHKCCEYNESREEGKSLLKEIALS 323


>SB_55709| Best HMM Match : PsbI (HMM E-Value=2.4)
          Length = 240

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 355 VVVYRMFYAPYVKRKRYQVAEEWANKIIEYEEQTEETKASIS 480
           V  +  F+  Y KRK   +A  W   ++EYEE+ E  + + +
Sbjct: 42  VSFWSCFFLEYWKRKEVTLAYHW--DVLEYEEEAERPRPTFA 81


>SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 982

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 355 VVVYRMFYAPYVKRKRYQVAEEWANKIIEYEEQTEETKASIS 480
           V  +  F+  Y KRK   +A  W   ++EYEE+ E  + + +
Sbjct: 507 VSFWSCFFLEYWKRKEVTLAYHW--DVLEYEEEAERPRPTFA 546


>SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)
          Length = 836

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 391 KRKRYQVAEEWANKIIEYEEQTEETK 468
           K+KRY +  +W +KI  Y  +T  T+
Sbjct: 336 KKKRYTLKGDWTDKITCYRSETHVTR 361


>SB_3026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 915

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 435 DFISPFFSYLIPLSFYVRSVKHSINNDDTRSNC 337
           D +S FFS L+  SF +   ++S  ND+ R+ C
Sbjct: 780 DGLSAFFSRLLSESFGLNVKQNSARNDEGRAAC 812


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,006,404
Number of Sequences: 59808
Number of extensions: 258502
Number of successful extensions: 484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)