Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p09
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    28   4.5  
AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -2

Query: 492 DLGCRDTCFSFFRLLFIFYDF 430
           D+  RDT F+FF +LFI YDF
Sbjct: 387 DIPFRDT-FAFFAVLFIIYDF 406


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 420 FFSYLIPLSFYVRSVKHSINNDDT---RSNCYSHKD 322
           FF YL+ ++FY   +K+S + ++T    S CY   D
Sbjct: 484 FFDYLMQITFYAAILKYSGDREETGGLASCCYKKND 519


>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 483 CRDTCFSFFRLLFIFYDFISPFFSYLIPL 397
           C  + F+FFRL+F F++FI   F + + L
Sbjct: 382 CFRSTFTFFRLIFPFFEFIFLKFHFKLLL 410


>Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical
           protein F35G12.10 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 394 RKRYQVAEEWANKIIEYEEQTEETKASISTSQI 492
           RK  Q       + IEY ++TEETKA     Q+
Sbjct: 235 RKNVQTISNEIKRRIEYLKETEETKARFERDQL 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,704,560
Number of Sequences: 27780
Number of extensions: 214168
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)