Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p09
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35460.1 68418.m04217 expressed protein                             31   0.60 
At1g65010.1 68414.m07368 expressed protein similar to endosome-a...    29   3.2  
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ...    29   3.2  
At5g54390.1 68418.m06773 inositol monophosphatase family protein...    28   5.6  
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi...    27   7.4  
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    27   7.4  
At2g34300.1 68415.m04196 dehydration-responsive protein-related ...    27   9.7  

>At5g35460.1 68418.m04217 expressed protein
          Length = 381

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 47  KKLQYYVTKFCYYPFTLFLV 106
           KK  YY+  FCYY  T+FLV
Sbjct: 113 KKWHYYLLDFCYYANTIFLV 132


>At1g65010.1 68414.m07368 expressed protein similar to
           endosome-associated protein (GI:1016368) [Homo sapiens];
           similar to Centromeric protein E (CENP-E protein)
           (Swiss-Prot:Q02224) [Homo sapiens]
          Length = 1318

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 415 EEWANKIIEYEEQTEETKASISTSQIS 495
           EEW NK+ E E++ EE+  S S++  S
Sbjct: 283 EEWKNKVHELEKEVEESNRSKSSASES 309


>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 679

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = -2

Query: 411 YLIPLSFYVRSVKHSI----NNDDTRSNCY 334
           +L P SFY++  + ++    NND+TR+ CY
Sbjct: 616 FLKPTSFYIKQKRSTVSVIRNNDNTRAICY 645


>At5g54390.1 68418.m06773 inositol monophosphatase family protein
           similar to SP|Q42546 3'(2'),5'-bisphosphate nucleotidase
           (EC 3.1.3.7) {Arabidopsis thaliana}; contains Pfam
           profile PF00459: Inositol monophosphatase family;
           supporting cDNA gi|1354509|gb|U55205.1|ATU55205
          Length = 373

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 321 GPYGCSNYFWCRRCL*NVLRSLRKTKAVSSS 413
           G  GC NY   + CL N      KTKAV+ S
Sbjct: 173 GVLGCPNYPVKKECLSNGCNQAMKTKAVAGS 203


>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
           histidine kinase AHK2 [Arabidopsis thaliana]
           gi|13537196|dbj|BAB40774
          Length = 1176

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 340 ITSGVVVVYRMFYAPYVKRKRYQVAEEWANKIIEYEEQT 456
           +TSGV    ++   P+ +R++++    WA K +E E+QT
Sbjct: 324 LTSGVAYALKV---PHSEREKFEKEHGWAIKKMETEDQT 359


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 423 PFFSYLIPLSFYVRSVKHSINNDDTRSNCY 334
           P +  L+P  F+V +++    N DT  NCY
Sbjct: 567 PIYGSLVP--FHVATIRTVSGNQDTNRNCY 594


>At2g34300.1 68415.m04196 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 421 WANKIIEYEEQTEETKASISTSQISY*W 504
           W+ +++E + + +  ++SIS  Q SY W
Sbjct: 213 WSTQLVESQNEKKAQQSSISKDQSSYGW 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,271
Number of Sequences: 28952
Number of extensions: 187063
Number of successful extensions: 490
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)