Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11p08
(526 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 157 5e-39
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5) 30 1.0
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 5.4
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29) 27 7.2
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09) 27 9.5
SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64) 27 9.5
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 157 bits (381), Expect = 5e-39
Identities = 78/130 (60%), Positives = 95/130 (73%)
Frame = +2
Query: 137 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 316
+D K+P VPE++LK + L ++ K++EIFKRAE+YVKEYR KE
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 317 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVXL 496
DE+R+ + A+ GN+YVP EA+LAFVIRIRGIN VSPKVRK+LQL RLRQINNGVFV L
Sbjct: 63 VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122
Query: 497 NKATVNMLRI 526
NKAT NMLRI
Sbjct: 123 NKATANMLRI 132
>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
Length = 546
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 336 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSV 440
P +HA T P + N H +S S +T RRSV
Sbjct: 318 PFRHATTTITVLPSRYNNHTASSSHATTTIQRRSV 352
>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 239 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 364
R AI ++RE+++R E Y + + R+ R R R Y
Sbjct: 16 RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57
>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 239 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 364
R + ++REI++R E Y + + R+ RL R R Y
Sbjct: 27 RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 311 KERDEIRLARQARNRGNYYVP 373
K RD +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 329 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRK 442
RL R + R NYY+ + +AF + I + + P R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923
>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
Length = 482
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +2
Query: 122 PVKGKEDSKKLP--AVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYV 295
P K KE SK + AV +S+LK + T ++ AI KKR + +Y+
Sbjct: 305 PAK-KESSKHIEKNAVKKSILKAPKRNAKKAATDAEQTTTKK--AIDKKRRRYNSRRRYI 361
Query: 296 KEYRIKERDEIRLARQARNR 355
+ R R R R R
Sbjct: 362 RRRRFTSRRRATRRRYTRRR 381
>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 333 SLISSRSLMRYSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDS 166
SL SR+ M Y LK++L L+ ++ L S C+L R ++ +S D+
Sbjct: 142 SLAISRNQMELFGLYAGMRLKVALVGLIYKKILNSSRCSLSTVRTGHVINLISNDA 197
>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
Length = 310
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 389 PIWLPRERSSCHDCVLVWLV*FHHVP 312
P+ P E S C CVL WL ++ P
Sbjct: 28 PLMAPCEHSYCSACVLGWLTHYNTCP 53
>SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)
Length = 325
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 218 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRG 358
L+ L+ R I+K AE+ +K R+KE D I + +RG
Sbjct: 219 LRQALRERDRLIEKINSAVMSAEEQLKVRRLKEDDSIDQLSRHEHRG 265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,439,860
Number of Sequences: 59808
Number of extensions: 259854
Number of successful extensions: 723
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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