Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11p06
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0304 - 16469075-16469192,16469874-16469956,16470079-164701... 100 1e-21
09_02_0154 + 5055946-5058721,5058754-5058770 31 0.54
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 31 0.94
01_03_0223 + 13924231-13924510,13924670-13924893,13925482-139257... 31 0.94
05_02_0105 + 6644264-6644344,6645573-6646097,6646185-6646410,664... 30 1.2
03_01_0291 - 2250349-2250966,2251062-2251444,2251604-2251981,225... 30 1.2
12_01_0371 - 2851186-2851491,2851582-2851765,2851967-2852156,285... 28 6.7
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 28 6.7
06_02_0043 - 10906806-10907036,10907757-10907897 27 8.8
01_06_1606 + 38587709-38588002 27 8.8
>07_03_0304 -
16469075-16469192,16469874-16469956,16470079-16470157,
16470269-16470291
Length = 100
Score = 100 bits (239), Expect = 1e-21
Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Frame = +2
Query: 248 LTVEVMFGGGAELLFNK-VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREE 424
LT+E FGGG ELL K K ++ L P + + +K LL W+K NL+ ER E
Sbjct: 3 LTLE--FGGGLELLLEKSTKVHKVDLQP------NDGDGKVVMKGLLAWVKSNLIKERPE 54
Query: 425 LFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHGG 562
+FLK DSVRPG+LVLIN+ DWEL G L+ EL+E D ++FISTLHGG
Sbjct: 55 MFLKGDSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100
>09_02_0154 + 5055946-5058721,5058754-5058770
Length = 930
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/29 (37%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Frame = +2
Query: 470 INEEDWEL-HGQLNYELKENDKIMFISTL 553
I+E +W+L +GQLN++L +N K+ +++++
Sbjct: 393 IDEAEWKLFYGQLNWQLTKNQKLNYVTSI 421
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 112 SIVIKSNKSLNYTQIFYYCYL*TAHTVPICLFLYLVVL*DRNGRNSNCRSDVWG 273
S + + K + Q + +C+L V I L L LV L ++NG+ S C+ +G
Sbjct: 440 SPIFRVPKMESNRQQYVHCFLLRQKAVVILLVLILVWLRNKNGKRSKCKGVRYG 493
>01_03_0223 +
13924231-13924510,13924670-13924893,13925482-13925735,
13926041-13926422,13926938-13927369
Length = 523
Score = 30.7 bits (66), Expect = 0.94
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 461 LVLINEEDWELHGQLNYELKENDKIMFISTL 553
L+L N EDWE H ++ + +DK+ F+S +
Sbjct: 143 LILANGEDWERHRKVVHPAFNHDKLKFMSVV 173
>05_02_0105 +
6644264-6644344,6645573-6646097,6646185-6646410,
6646498-6646875,6647035-6647417,6647513-6648130
Length = 736
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 151 QIFYYCYL*TAHTVPICLFLYLVVL*DRNGRNSNCRSDVWG 273
Q + +C+L V I L L LV L ++NG+ S C+ +G
Sbjct: 33 QQYVHCFLLRQKAVVILLVLILVWLRNKNGKRSKCKGVRYG 73
>03_01_0291 -
2250349-2250966,2251062-2251444,2251604-2251981,
2252147-2252294,2252382-2252906,2253990-2254112,
2254151-2254205,2254510-2254640
Length = 786
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 151 QIFYYCYL*TAHTVPICLFLYLVVL*DRNGRNSNCRSDVWG 273
Q + +C+L V I L L LV L ++NG+ S C+ +G
Sbjct: 109 QQYVHCFLLRQKAVVILLVLILVWLRNKNGKRSKCKGVRYG 149
>12_01_0371 -
2851186-2851491,2851582-2851765,2851967-2852156,
2853375-2853613,2853862-2853947,2854720-2854827,
2854929-2855031,2855152-2855213
Length = 425
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +2
Query: 440 DSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 559
+++ P +L+L E W + G + + + ++++ S+LHG
Sbjct: 213 ENISPDLLLLNKEYAWHIGGGFSQQEVQEWRLLYHSSLHG 252
>04_01_0084 -
912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 287 LFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLI 388
+F ++K+ +++ +KT S NW+LKELL+
Sbjct: 623 VFERLKQLDVSGTCIKTLDLRSMRGNWSLKELLL 656
>06_02_0043 - 10906806-10907036,10907757-10907897
Length = 123
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 305 RKEIALPPLKTFLPDSQNQNWTLKELL 385
R+E+ PPL LP Q Q+W + L+
Sbjct: 31 RREVPPPPLDPILPYLQGQSWCMHLLM 57
>01_06_1606 + 38587709-38588002
Length = 97
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 394 KRQPAGGKRRVVLEG*FCPT 453
K QPAG KR+V FCPT
Sbjct: 29 KTQPAGSKRKVPEPDTFCPT 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,305,987
Number of Sequences: 37544
Number of extensions: 265292
Number of successful extensions: 557
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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