Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p06
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               31   0.73 
SB_50187| Best HMM Match : SAM_1 (HMM E-Value=3.1e-21)                 29   2.9  
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_36498| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-14)                 28   6.8  
SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)                 28   6.8  
SB_10789| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
 Frame = -3

Query: 530 YHFL*VHNLTVRGAPSLLH*STRVYQVGQ--NHPSRTTLLFPPAGCLLTKSTALLTSNSD 357
           YHF   H+L +R  PS        Y  GQ    P R            T ST+   S S 
Sbjct: 98  YHFKVAHHLDMRREPSRYRMMLARYFTGQISRPPPRPASTSLTTSAAFTSSTSSAASTSL 157

Query: 356 FENPVKMSSTAA 321
             +PV  SST++
Sbjct: 158 TTSPVSTSSTSS 169


>SB_50187| Best HMM Match : SAM_1 (HMM E-Value=3.1e-21)
          Length = 239

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +2

Query: 290 FNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVL 469
           F+++K K+  +    T       Q W ++E+  WL +  L E  ELF K D   P +L L
Sbjct: 120 FSRLKSKKPEITKAVTAPAGRIIQFWAVEEVCRWLGNQGLGEYCELFTKHDIRGPELLSL 179

Query: 470 INEE 481
              +
Sbjct: 180 TRND 183


>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +2

Query: 299 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 478
           VKR+E+ L  +K F    + ++W L + L  L + L + +  +F         +   + E
Sbjct: 294 VKREEVTLEGIKQFFVLVEKEDWKL-DTLCDLYETLTITQAVIFANTRRKVDWLAAKMTE 352

Query: 479 EDW---ELHGQLNYELKENDKIM 538
           +D     +HG ++   KE D IM
Sbjct: 353 KDHTVSSMHGDMSQ--KERDIIM 373


>SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1209

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 224  YKI-EMAETLTVEVMFGGGAELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLI 388
            YK+ E A T+T EV   G   ++ +    KEIA+P +K     +Q   + +  LLI
Sbjct: 954  YKVYERAVTVTPEVTLTGKEAVIASISMPKEIAVPQMKAQTSGAQMAAYVVLPLLI 1009


>SB_36498| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-14)
          Length = 596

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 316 NFFPLYFIKEQFRSAPKHHFY 254
           NFFP+ ++   + SA K HF+
Sbjct: 238 NFFPILYLVNAYHSAKKKHFF 258


>SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)
          Length = 556

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 316 NFFPLYFIKEQFRSAPKHHFY 254
           NFFP+ ++   + SA K HF+
Sbjct: 204 NFFPILYLVNAYHSAKKKHFF 224


>SB_10789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -3

Query: 458 YQVGQNHPSRTTLLFPPAGCLLTKSTALLTSNSDFENPVKMSSTAAVQFLSS 303
           +++GQ   S+  +LF P    +    +L + N D  +   +S    VQ LS+
Sbjct: 2   HKIGQQSASQKNILFYPESGSIASQDSLNSENPDSSSGAPLSPALIVQDLST 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,691,358
Number of Sequences: 59808
Number of extensions: 317306
Number of successful extensions: 640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)