Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p06
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF039720-12|AAB96704.1|  399|Caenorhabditis elegans Hypothetical...    28   6.0  
AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical ...    28   6.0  
AL132877-10|CAB60850.1|  402|Caenorhabditis elegans Hypothetical...    27   7.9  

>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical protein
            C06E1.10 protein.
          Length = 1148

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 281  ELLFNKVKRKEIALPPLKTFLPDS--QNQNWTLKELLIWLKDNL 406
            E+L NK+  KE+     ++ L +   +N+NW L+E L W+ +++
Sbjct: 1082 EMLLNKLIEKEVTT---RSSLKEQWLKNENWLLEEYLEWVPESV 1122


>AF039720-12|AAB96704.1|  399|Caenorhabditis elegans Hypothetical
           protein F33D11.10 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +2

Query: 299 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 478
           VKR E+ L  +K F      + W   + LI L D L + +  LF         +   + E
Sbjct: 229 VKRDELTLEGIKQFFVAVDREEWKF-DTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKE 287

Query: 479 EDW---ELHGQLNYELKENDKIM 538
            ++    +HG +  E K+ D++M
Sbjct: 288 ANFTVSSMHGDM--EQKDRDEVM 308


>AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical
           protein Y65B4A.6 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +2

Query: 299 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 478
           VKR E+ L  +K F      + W   + LI L D L + +  LF         +   + E
Sbjct: 229 VKRDELTLEGIKQFFVAVDREEWKF-DTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKE 287

Query: 479 EDW---ELHGQLNYELKENDKIM 538
            ++    +HG +  E K+ D++M
Sbjct: 288 ANFTVSSMHGDM--EQKDRDEVM 308


>AL132877-10|CAB60850.1|  402|Caenorhabditis elegans Hypothetical
           protein Y105E8B.4 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +1

Query: 322 AAVEDIFTGFSKSELDVKRAVDLVK 396
           A VE I+ G  KS++DV +AVD+++
Sbjct: 281 AMVEFIYAGVIKSDIDVYQAVDVMQ 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,133,437
Number of Sequences: 27780
Number of extensions: 264112
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)