Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p06
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    28   4.2  
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    28   4.2  
At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA) ide...    28   4.2  
At4g34070.1 68417.m04834 expressed protein                             28   4.2  
At2g41400.1 68415.m05109 expressed protein                             28   4.2  
At2g40920.1 68415.m05050 F-box family protein contains Pfam PF00...    28   5.6  
At1g56100.1 68414.m06442 pectinesterase inhibitor domain-contain...    28   5.6  
At4g00580.1 68417.m00081 COP1-interacting protein-related simila...    27   7.4  
At1g68360.1 68414.m07808 zinc finger protein-related similar to ...    27   7.4  
At5g06260.1 68418.m00700 nucleolar protein-related contains weak...    27   9.7  
At1g54270.1 68414.m06187 eukaryotic translation initiation facto...    27   9.7  

>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 327 GGSAISFLFTLLKSNSAPPPNITSTVRVSAIS 232
           GG A ++ F L K  S PP + T+T R ++ S
Sbjct: 9   GGGAAAYSFELEKVKSPPPSSSTTTTRATSPS 40


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 327 GGSAISFLFTLLKSNSAPPPNITSTVRVSAIS 232
           GG A ++ F L K  S PP + T+T R ++ S
Sbjct: 9   GGGAAAYSFELEKVKSPPPSSSTTTTRATSPS 40


>At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA)
           identical to phospholipase D zeta SP:P58766 from
           [Arabidopsis thaliana]; similar to phospholipase D
           [Lycopersicon esculentum] GI:12060550; contains Pfam
           profile PF00614: Phospholipase D. Active site motif
          Length = 820

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 269 GGGAELLFNKVKRKEIALPPLKTFLPDSQNQNWTLK 376
           G G   L +  +  EI +PPL    PD++ + WT++
Sbjct: 437 GSGRRYLISMAQLAEITVPPLPIVQPDNE-EGWTVQ 471


>At4g34070.1 68417.m04834 expressed protein
          Length = 363

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 431 LKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 559
           L +DSV    L+L  E  W + G L +      K+++ S+LHG
Sbjct: 302 LYEDSVSSDRLLLKKEYAWHIGGALPHHELVEWKLLYRSSLHG 344


>At2g41400.1 68415.m05109 expressed protein 
          Length = 150

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 443 NHPSRTTLLFPPAGCLLTKSTALLTSNS-DFENPVKMSSTAAVQFLS 306
           N P+ +  ++PP G L+      +   S   EN + ++S AA  FLS
Sbjct: 102 NLPTNSCFIYPPGGVLIASVVNEIYGGSISLENFIVIASYAATTFLS 148


>At2g40920.1 68415.m05050 F-box family protein contains Pfam
           PF00646: F-box domain; similar to F-box protein family,
           AtFBX8 (GP:20197464) {Arabidopsis
           thaliana}|502017|gb|T20576.1|T20576
          Length = 436

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 26/97 (26%), Positives = 42/97 (43%)
 Frame = +2

Query: 239 AETLTVEVMFGGGAELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVER 418
           A T+  +++  GG   +F     K+     L   L D+    W+ K L++      LVE 
Sbjct: 306 AVTMMADLIEYGGKIAIFYHTNLKDEGSADLWV-LEDTGKSEWSKKTLVLQPCQRHLVED 364

Query: 419 EELFLKDDSVRPGILVLINEEDWELHGQLNYELKEND 529
            EL +K  + + G ++L   E       L Y L+ ND
Sbjct: 365 IELIVK-GTTQDGKVILAPVEMHSRFYILYYNLQSND 400


>At1g56100.1 68414.m06442 pectinesterase inhibitor domain-containing
           protein contains TIGRFAM TIGR01614: pectinesterase
           inhibitor domain; contains weak hit to Pfam PF04043:
           Plant invertase/pectin methylesterase inhibitor
          Length = 232

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 398 DNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKEND 529
           DNLL E  +    DD+ + GI+ ++N     +  +   +LKE D
Sbjct: 118 DNLLAELNQT--TDDAEKEGIIDVVNATSEAIENETEVDLKEKD 159


>At4g00580.1 68417.m00081 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646
          Length = 317

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 398 DNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKEND 529
           DNLL E  +    DD+ + GI+ L+N     +  +    +KE D
Sbjct: 203 DNLLAELNQT--SDDAEKEGIIGLVNATSEAIENETEMSVKEKD 244


>At1g68360.1 68414.m07808 zinc finger protein-related similar to
           zinc finger protein GI:790683 from [Arabidopsis
           thaliana]
          Length = 244

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 339 NVFNGGSAISFLFTLLKSNSAPPPNITSTVRV 244
           N  N GSA  FL   + S  APPP++ S+  V
Sbjct: 116 NFSNAGSASQFLRNPIVSAFAPPPHLLSSSAV 147


>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
           similarity to nucleolar protein C7C (GI:13540302)
           [Rattus norvegicus]
          Length = 424

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 431 LKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 559
           L +DSV    L+L  E  W + G L +      K+++ S++HG
Sbjct: 206 LYEDSVSSDRLLLKKEYAWHIGGALPHHELVEWKLLYHSSVHG 248


>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
           4A-2 / eIF-4A-2 similar to eukaryotic translation
           initiation factor 4A GI:19696 from [Nicotiana
           plumbaginifolia]
          Length = 412

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 299 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFL 433
           VKR E+ L  +K F  + + ++W L E L  L + L + +  +F+
Sbjct: 242 VKRDELTLEGIKQFYVNVEKEDWKL-ETLCDLYETLAITQSVIFV 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,992,345
Number of Sequences: 28952
Number of extensions: 231214
Number of successful extensions: 563
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)