Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11p02
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 74 8e-14
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 73 1e-13
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 71 8e-13
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 70 2e-12
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 69 2e-12
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 69 2e-12
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 67 1e-11
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 66 2e-11
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 66 3e-11
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 65 4e-11
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 63 2e-10
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 63 2e-10
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 63 2e-10
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 61 6e-10
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 61 8e-10
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 61 8e-10
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 60 1e-09
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 60 1e-09
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 60 1e-09
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 60 2e-09
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 60 2e-09
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 59 3e-09
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 57 1e-08
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 57 1e-08
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 56 2e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 54 1e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 53 2e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 53 2e-07
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 52 3e-07
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 52 3e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 52 3e-07
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 52 3e-07
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 52 4e-07
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 52 4e-07
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 52 4e-07
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 52 5e-07
At2g47310.1 68415.m05906 flowering time control protein-related ... 51 7e-07
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 51 9e-07
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 51 9e-07
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 51 9e-07
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 50 1e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 50 1e-06
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 50 2e-06
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 50 2e-06
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 50 2e-06
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 50 2e-06
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 50 2e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 50 2e-06
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 49 3e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 49 3e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 49 3e-06
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 49 3e-06
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 49 3e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 49 3e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 49 3e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 49 3e-06
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 49 4e-06
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 49 4e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 49 4e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 48 5e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 48 5e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 5e-06
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 48 5e-06
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 48 8e-06
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 48 8e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 48 8e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 48 8e-06
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 47 1e-05
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 47 1e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 47 1e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 47 1e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 46 3e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 46 3e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 46 3e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 46 3e-05
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 46 3e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 46 3e-05
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 45 4e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 45 6e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 45 6e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 45 6e-05
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 45 6e-05
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 44 8e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 44 8e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 44 8e-05
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 44 8e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 44 8e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 44 8e-05
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 44 8e-05
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 44 1e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 42 3e-04
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 3e-04
At4g10610.1 68417.m01735 RNA-binding protein, putative 42 3e-04
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 42 3e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 42 6e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 6e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 42 6e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 41 7e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 41 7e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 41 7e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 40 0.001
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 40 0.001
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 40 0.002
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 40 0.002
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 39 0.004
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 39 0.004
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 39 0.004
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 39 0.004
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 38 0.005
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 38 0.005
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 38 0.007
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 38 0.007
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 38 0.007
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 38 0.007
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 38 0.009
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 38 0.009
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 37 0.012
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 37 0.016
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 37 0.016
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 37 0.016
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 37 0.016
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 37 0.016
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 36 0.021
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 36 0.021
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 36 0.021
At5g51300.2 68418.m06360 splicing factor-related contains simila... 36 0.027
At5g51300.1 68418.m06359 splicing factor-related contains simila... 36 0.027
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 36 0.027
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 36 0.027
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 36 0.027
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.027
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 36 0.036
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 36 0.036
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 36 0.036
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 36 0.036
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 31 0.044
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 35 0.048
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 35 0.048
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.063
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 35 0.063
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 35 0.063
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 34 0.083
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 34 0.083
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 34 0.11
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 34 0.11
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 34 0.11
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 34 0.11
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 34 0.11
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 34 0.11
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 34 0.11
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 34 0.11
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.15
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 33 0.15
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 33 0.15
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 33 0.15
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 33 0.15
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 33 0.15
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 33 0.15
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 33 0.15
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.19
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 33 0.19
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 33 0.25
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 32 0.34
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 32 0.34
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.34
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.34
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 32 0.45
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 32 0.45
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 32 0.45
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.59
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 31 0.78
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 31 0.78
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 31 1.0
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 1.0
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 30 1.4
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 30 1.4
At5g49000.1 68418.m06062 kelch repeat-containing F-box family pr... 30 1.8
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 30 1.8
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 30 1.8
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 2.4
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 29 2.4
At5g55820.1 68418.m06956 expressed protein 29 3.1
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 29 3.1
At2g38620.1 68415.m04744 cell divsion control protein, putative ... 29 3.1
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 4.1
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 4.1
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 4.1
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 4.1
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 29 4.1
At4g39550.1 68417.m05592 kelch repeat-containing F-box family pr... 28 5.5
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT... 28 5.5
At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing ... 28 7.2
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 28 7.2
At1g67140.1 68414.m07638 expressed protein 28 7.2
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 28 7.2
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 9.6
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 27 9.6
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 27 9.6
At5g14690.1 68418.m01721 expressed protein predicted protein, Ar... 27 9.6
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 9.6
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 9.6
At1g59740.1 68414.m06726 proton-dependent oligopeptide transport... 27 9.6
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 27 9.6
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 74.1 bits (174), Expect = 8e-14
Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 31/184 (16%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 415
+++ NLS+ TT+ +L+ F +YG++ ++R+ +GFV+ EN + A++ LN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 416 G------ELVHGQAIK-----IEAAKSRKAPSTPT------TKIFVGNLTDKTRAPEVRE 544
G E G+A K +E ++ + S+ ++V NL D ++RE
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 545 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
LF +FGT+ C ++R+ GFV A + + + E+NG MV G+P+ V L+ +
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 704 VRQR 715
+R
Sbjct: 407 EERR 410
Score = 66.1 bits (154), Expect = 2e-11
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Frame = +2
Query: 224 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENE 382
+S +G +F+ NL L F GT+V C + R YGFV + E
Sbjct: 125 DSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTE 184
Query: 383 QVGREAIQNLNGELVHGQAIKI-----EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVREL 547
+ AI+ LNG++++ + I + + + A T ++V NL++ T E++
Sbjct: 185 DSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTT 244
Query: 548 FQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVD 667
F ++G++ ++R+ +GFV+ + D A++ LNG D
Sbjct: 245 FGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFD 291
Score = 62.9 bits (146), Expect = 2e-10
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 412
+++G+L T++ L F + VV + R+ YG+V+ N +A+Q L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 413 NGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV- 586
N ++G+ I+I +++ A + +FV NL + E F GT+V C +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVAT 167
Query: 587 ------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 685
R YGFV D +AI++LNG +++ + + V
Sbjct: 168 DHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 73.3 bits (172), Expect = 1e-13
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 17/154 (11%)
Frame = +2
Query: 245 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 403
G +F+ NL + T A L+ +F+K+G +V C + R YGFV E E AI
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 404 QNLNGELVHGQAI---KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV- 571
Q LN +V + I K R P T +++ NL +RE F +FG +V
Sbjct: 170 QTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVS 229
Query: 572 ------ECDIVRNYGFVHLDATGDVNDAIKELNG 655
E + R Y FV+ D D A + +NG
Sbjct: 230 LAIAKDENRLCRGYAFVNFDNPEDARRAAETVNG 263
Score = 58.0 bits (134), Expect = 6e-09
Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 19/173 (10%)
Frame = +2
Query: 248 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 403
T +++G+L TE L F ++ ++ + ++ YG+ + + Q AI
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 404 QNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 580
+ N L++G+ I++ + ++ A +FV NL + ++++F+KFG +V C
Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCK 142
Query: 581 IV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPM---KVQLSTSRVR 709
+ R YGFV + + AI+ LN +V + + K T RV+
Sbjct: 143 VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVK 195
Score = 44.4 bits (100), Expect = 8e-05
Identities = 38/180 (21%), Positives = 74/180 (41%), Gaps = 31/180 (17%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 415
+++ NL +E LR F ++G +V I R Y FV+ +N + R A + +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 416 GELVHGQAIKIEAAKSRKAPS-----------------TPTTKIFVGNLTDKTRAPEVRE 544
G + + + A+ + + I+V N+ E+R+
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 545 LFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
F + GT+ ++ + +GFV + DA+K +G M G+P+ V ++ +
Sbjct: 323 HFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 415
I++ N++ TE +LR F + GT+ ++ + +GFV + +A++ +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 416 GELVHGQAIKIEAAKSRK 469
G++ HG+ + + A+ ++
Sbjct: 366 GQMFHGKPLYVAIAQKKE 383
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Frame = +2
Query: 425 VHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN---- 592
VH A+ A S + S T ++VG+L + + F +F ++ + ++
Sbjct: 4 VHA-ALHAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSG 62
Query: 593 ----YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 694
YG+ + + D N AI++ N +++G+ ++V S
Sbjct: 63 RSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWS 100
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 70.9 bits (166), Expect = 8e-13
Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 23/177 (12%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+GNL+ L LFE+ GTV +++ R +GFV M + A++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 410 LNGELVHGQAIKIEAAKSR-----KAPST--PTTKIFVGNLTDKTRAPEVRELFQKFGTV 568
N ++G+ + + A R +AP P +++VGNL + +LF + G V
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 569 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 715
VE +V R +GFV + ++N+AI L+G ++G+ ++V ++ R +R
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 327
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +2
Query: 251 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 406
F++++GNL L LF ++G VVE +V R +GFV M + EAI
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 407 NLNGELVHGQAIKIEAAKSR 466
L+G+ + G+AI++ A+ R
Sbjct: 304 ALDGQNLEGRAIRVNVAEER 323
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 69.7 bits (163), Expect = 2e-12
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 21/160 (13%)
Frame = +2
Query: 242 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREA 400
+G IFI NL L F +GT++ C + + YGFV E E+ + A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 401 IQNLNGELVHGQAIKI-------EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKF 559
I LNG L++ + + + E A+ P+ T ++V NL + E+R+ F KF
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 560 GTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGM 658
G + ++R+ +GFV+ + T A++++NG+
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGI 292
Score = 57.2 bits (132), Expect = 1e-08
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 415
++ G+L K TEA L LF+ VV + R+ Y +++ N A++ LN
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 416 GELVHGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
+ + I+I S + PST + IF+ NL + E F FGT++ C +
Sbjct: 111 YTPLFDRPIRIML--SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVA 168
Query: 587 -------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 685
+ YGFV + AI +LNGM+++ + + V
Sbjct: 169 MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Score = 51.2 bits (117), Expect = 7e-07
Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 31/187 (16%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 415
+++ NL + E +LR F K+G + ++R+ +GFV+ E + A++ +N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 416 G------ELVHGQAIK-----------IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 544
G L G+A K E + + + +++ NL D +++E
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKE 350
Query: 545 LFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
+F ++G V ++ R +GFV + A+ E+NG M+ +P+ + L+ R
Sbjct: 351 MFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA-QR 409
Query: 704 VRQRXGH 724
R H
Sbjct: 410 KEDRRAH 416
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 69.3 bits (162), Expect = 2e-12
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 23/176 (13%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+GNL L LFE+ GTV +++ R +GFV M + +A++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 410 LNGELVHGQAIKIEAAKSR-----KAPST--PTTKIFVGNLTDKTRAPEVRELFQKFGTV 568
N V+G+ + + A R + P +I+VGNL + + LF + G V
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV 233
Query: 569 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQ 712
V+ +V R +GFV + +VN AI L+G ++G+ +KV ++ R R+
Sbjct: 234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +2
Query: 251 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 406
F+I++GNL L LF ++G VV+ +V R +GFV M NE AI
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query: 407 NLNGELVHGQAIKIEAAKSR 466
L+G+ + G+AIK+ A+ R
Sbjct: 267 ALDGQNLEGRAIKVNVAEER 286
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 69.3 bits (162), Expect = 2e-12
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 13/142 (9%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL--VH 430
+F+GN +T ++DL LF+KYG V D+ Y FV+ E+E+ +AI+ L+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63
Query: 431 GQAIKIEAAKSR--------KAPST--PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVEC 577
+ + +E AK KAPS PT +FV N +T+ ++ + F+ +G V
Sbjct: 64 KRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNV 123
Query: 578 DIVRNYGFVHLDATGDVNDAIK 643
I RN+ FV + D A++
Sbjct: 124 RIRRNFSFVQFETQEDATKALE 145
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +2
Query: 494 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 652
+FVGN +TR ++ LF K+G V D+ Y FV+ + D DAI++L+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLD 56
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 248 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 424
T +F+ N +T E D+ FE YG V I RN+ FV E ++ +A++
Sbjct: 92 TKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSK 151
Query: 425 VHGQAIKIEAA 457
+ + + +E A
Sbjct: 152 ILDRVVSVEYA 162
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 66.9 bits (156), Expect = 1e-11
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 424
++ GN+ + TE L+ +F G + C ++R +YGFVH + + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 425 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV---- 586
+ GQ +K+ A ++ ++ IFVG+L+ + + + F F + + ++
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQK 184
Query: 587 ----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 697
R +GFV D AI E+NG V + ++ +T
Sbjct: 185 TGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 225
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +2
Query: 482 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIK 643
PTT ++ GN+ + ++E+F G + C ++R +YGFVH + AI
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIM 118
Query: 644 ELNGMMVDGQPMKV 685
LNG + GQPMKV
Sbjct: 119 TLNGRHIFGQPMKV 132
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVGREAIQNLNGE 421
+++GNLS + T+ DL LF G + E + R+ +GFV AIQ N +
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 329
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 66.5 bits (155), Expect = 2e-11
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Frame = +2
Query: 218 VSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHME 376
V + + +G IFI NL L F +G ++ C + + YGFV +
Sbjct: 122 VRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYD 181
Query: 377 NEQVGREAIQNLNGELVHGQAIKIE--AAKSRKAPS---TPTTKIFVGNLTDKTRAPEVR 541
++ + AI LNG L++ + + + K ++ PS T ++V NL++ E+
Sbjct: 182 TDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELN 241
Query: 542 ELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVD 667
++F +FG C I+R+ +GFV+ + + D A+ LNG D
Sbjct: 242 KVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFD 290
Score = 62.9 bits (146), Expect = 2e-10
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Frame = +2
Query: 245 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREA 400
GT +++G+L T++ L F + G VV + R+ YG+V+ Q A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 401 IQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVEC 577
+ LN ++G+AI++ + + + IF+ NL + E F FG ++ C
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSC 162
Query: 578 DIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 685
+ + YGFV D AI +LNGM+++ + + V
Sbjct: 163 KVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 62.5 bits (145), Expect = 3e-10
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 31/177 (17%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 415
+++ NLS+ ++ +L +F ++G C I+R+ +GFV+ EN A+ LN
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 416 G------ELVHGQAIK-----------IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 544
G E G+A K E + A + + ++V NL + ++RE
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 545 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 694
F FGT+ C ++R+ GFV + AI E+NG M+ +P+ V L+
Sbjct: 346 HFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Frame = +2
Query: 452 AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 607
AA + A TT ++VG+L ++ E F + G VV + R+ YG+V+
Sbjct: 33 AAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVN 92
Query: 608 LDATGDVNDAIKELNGMMVDGQPMKVQLS 694
D + A+ ELN M ++G+ ++V S
Sbjct: 93 YATPQDASRALNELNFMALNGRAIRVMYS 121
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 415
+++ NL + T+ LR F +GT+ C ++R+ GFV + AI +N
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 416 GELVHGQAIKIEAAKSRK 469
G+++ + + + A+ ++
Sbjct: 389 GKMIVTKPLYVALAQRKE 406
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 65.7 bits (153), Expect = 3e-11
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 17/161 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 430
+F GN E DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
Query: 431 GQAIKIEAAK------------SRKAPST--PTTKIFVGNL-TDKTRAPEVRELFQKFGT 565
G+ +++E K SR++ S+ P+ +FV N D TR ++ + F+ +G
Sbjct: 64 GRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGK 123
Query: 566 VVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 688
+V I RN+ F+ +A D A+ N + + + V+
Sbjct: 124 IVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVE 164
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 257 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 433
+F+ N +D T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMD 158
Query: 434 QAIKIEAA 457
+ I +E A
Sbjct: 159 KVISVEYA 166
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 65.3 bits (152), Expect = 4e-11
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 33/186 (17%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 415
+++ NL + T+ADL+ LF ++G + ++ R +GFV+ E + AI+ +N
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 416 GELVHGQAIKIEAAKSRKAPSTPTTK-------------------IFVGNLTDKTRAPEV 538
G +V + + + A+ RK T K ++V NL D ++
Sbjct: 181 GVVVDEKELHVGRAQ-RKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 539 RELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 697
ELF +FGT+ C ++ + GFV + + + A+ ++NG MV +P+ V L+
Sbjct: 240 EELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQ 299
Query: 698 SRVRQR 715
+ + +
Sbjct: 300 CKEQHK 305
Score = 60.9 bits (141), Expect = 8e-10
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Frame = +2
Query: 227 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQ 385
++M G G +F+ NL + L +F +G V+ C + R+ YGFV ++
Sbjct: 25 NRMSGRGN--VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDL 82
Query: 386 VGREAIQNLNGELVHGQAIKIEAAKSRKA--PSTPTTKIFVGNLTDKTRAPEVRELFQKF 559
A NG L+ Q I + SR S T ++V NL + +++ LF +F
Sbjct: 83 SVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEF 142
Query: 560 GTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 685
G + ++ R +GFV+ + AI+++NG++VD + + V
Sbjct: 143 GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHV 191
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 63.3 bits (147), Expect = 2e-10
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 16/160 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 430
+F GN E+DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 431 GQAIKIEAAK-----------SRKAPS--TPTTKIFVGNL-TDKTRAPEVRELFQKFGTV 568
G+ +++E K SR++ S P+ +FV N TR ++ F+ +G +
Sbjct: 64 GRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKI 123
Query: 569 VECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 688
V I RN+ F+ +A D A+ N + + + V+
Sbjct: 124 VNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVE 163
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 257 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 433
+F+ N + T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMD 157
Query: 434 QAIKIEAA 457
+ I +E A
Sbjct: 158 KVISVEYA 165
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 63.3 bits (147), Expect = 2e-10
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 16/160 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 430
+F GN E+DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 431 GQAIKIEAAK-----------SRKAPS--TPTTKIFVGNL-TDKTRAPEVRELFQKFGTV 568
G+ +++E K SR++ S P+ +FV N TR ++ F+ +G +
Sbjct: 64 GRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKI 123
Query: 569 VECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 688
V I RN+ F+ +A D A+ N + + + V+
Sbjct: 124 VNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVE 163
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 257 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 433
+F+ N + T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMD 157
Query: 434 QAIKIEAA 457
+ I +E A
Sbjct: 158 KVISVEYA 165
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 62.9 bits (146), Expect = 2e-10
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 14/161 (8%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 424
+++GN+ + TE L+ +F G V ++R +YGFVH + + AI +LNG
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 425 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV---- 586
+ GQ IK+ A ++ ++ IFVG+L+ + + + F F + + ++
Sbjct: 121 LFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQK 180
Query: 587 ----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 697
R +GFV D AI E+NG + + ++ +T
Sbjct: 181 TGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWAT 221
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 61.3 bits (142), Expect = 6e-10
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 25/177 (14%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYG--FVHMENEQVGREAIQNL 412
++ N+ +T D+R LFEKYG+V++ ++ RN G F+ M + + A+++L
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSL 154
Query: 413 NGELVHGQAIKIEAAKSRK--------APS-TPTTKIFVGNLTDKTRAPEVRELFQ-KFG 562
G+ +K++ AK++K PS PT +FV NL + RA ++E F G
Sbjct: 155 ESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTG 214
Query: 563 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 709
VV +++ YGFV A+ E G G+P+++ S V+
Sbjct: 215 NVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 271
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYG--FVHLDATGDVNDAIKE 646
T++ N+ + ++R LF+K+G+V++ ++ RN G F+ + + + A+K
Sbjct: 94 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKS 153
Query: 647 LNGMMVDGQPMKVQLSTSRVRQ 712
L +G+ +KV + ++ ++
Sbjct: 154 LESCEYEGRRLKVDYAKTKKKK 175
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 60.9 bits (141), Expect = 8e-10
Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 31/184 (16%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 415
+++ NL++ TT+ DL+ F +YG + ++++ +GFV+ EN A+++LN
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 416 G------ELVHGQA-----------IKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 544
G E G+A ++ E A ++ ++V NL +++E
Sbjct: 91 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 150
Query: 545 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
+F FGTV ++R+ GFV + +A+ +L+G M++ +P+ V ++ +
Sbjct: 151 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 210
Query: 704 VRQR 715
+R
Sbjct: 211 EDRR 214
Score = 35.9 bits (79), Expect = 0.027
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +2
Query: 410 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 589
LN + V+ + A T T ++V NL + T +++ F ++G + +++
Sbjct: 3 LNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMK 62
Query: 590 N-------YGFVHLDATGDVNDAIKELNGMMVD 667
+ +GFV+ + D A++ LNG D
Sbjct: 63 DGEGKSKGFGFVNFENADDAARAVESLNGHKFD 95
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 60.9 bits (141), Expect = 8e-10
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 19/177 (10%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 394
G KIFIG L TT F KYG + + I+R+ +GF+ + V
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 395 EAIQN---LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGT 565
+ I++ +NG+ V + + A ++ T KIFVG + E+++ F K+G
Sbjct: 75 KVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGN 134
Query: 566 VVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQ 712
VVE ++R+ +GFV D+ V++ + + G M+D +V++ + ++
Sbjct: 135 VVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK--GNMIDMADTQVEIKKAEPKK 189
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Frame = +2
Query: 248 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 403
T KIF+G + TE +L+ F KYG VVE ++R+ +GFV ++E+V E +
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Query: 404 QNLNGELVHGQAIKIEAAKSRKA 472
N + ++I+ A+ +K+
Sbjct: 168 SKGNMIDMADTQVEIKKAEPKKS 190
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 60.5 bits (140), Expect = 1e-09
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 394
G KIFIG L TT F KYG + + I+R+ +GF+ + V
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 395 EAIQN---LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGT 565
+ I++ +NG+ V + + A ++ T KIFVG + E+++ F K+G
Sbjct: 75 KVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGN 134
Query: 566 VVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 691
VVE ++R+ +GFV D+ V++ + + G M+D +V L
Sbjct: 135 VVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK--GNMIDMADTQVSL 182
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 60.5 bits (140), Expect = 1e-09
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 21/177 (11%)
Frame = +2
Query: 236 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 391
P K++ GNL A L + + + +++ R + FV M N +
Sbjct: 80 PAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDC 139
Query: 392 REAIQNLNGELVHGQAIKIEAA---KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQK 556
I NL+G G+A+K+ A K K P P T K+FVGNL+ + + F++
Sbjct: 140 NIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRE 199
Query: 557 FGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
G VV +V R YGFV + ++ A++ L+G ++G+ ++V L+ +
Sbjct: 200 CGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+GNLS T L F + G VV +V R YGFV ++ A+++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 410 LNGELVHGQAIKIEAAKSRK 469
L+G + G+AI++ A+ +K
Sbjct: 238 LDGFELEGRAIRVNLAQGKK 257
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 60.1 bits (139), Expect = 1e-09
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 23/170 (13%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 424
++ GN+ + TE L+ +F G + C ++R +YGFVH + + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 425 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE--LFQKFGTVVECDIV-- 586
+ GQ +K+ A ++ ++ IFVG+L +PEV + LF F C
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDL-----SPEVTDAALFDSFSAFNSCSSYYR 179
Query: 587 -------------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 697
R +GFV D AI E+NG V + ++ +T
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 229
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +2
Query: 482 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIK 643
PTT ++ GN+ + ++E+F G + C ++R +YGFVH + AI
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIM 118
Query: 644 ELNGMMVDGQPMKV 685
LNG + GQPMKV
Sbjct: 119 TLNGRHIFGQPMKV 132
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVGREAIQNLNGE 421
+++GNLS + T+ DL LF G + E + R+ +GFV AIQ N +
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 333
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 59.7 bits (138), Expect = 2e-09
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 21/160 (13%)
Frame = +2
Query: 242 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVEC----DIV---RNYGFVHMENEQVGREA 400
+G +FI NL L F +GT++ C D+V + YGFV E E+ + A
Sbjct: 129 SGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAA 188
Query: 401 IQNLNGELVHGQAIKI-------EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKF 559
I LNG L++ + + + + A+S T ++V NL + E+++ F K+
Sbjct: 189 IDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKY 248
Query: 560 GTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGM 658
G + ++ R++GFV+ + A++++NG+
Sbjct: 249 GDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGI 288
Score = 56.8 bits (131), Expect = 1e-08
Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 31/187 (16%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 415
+++ NL + T+ +L+ F KYG + ++ R++GFV+ + + A++ +N
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 416 G------ELVHGQAIK-----------IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 544
G L G+A K E + + + +++ NL D +++E
Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE 346
Query: 545 LFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
+F ++G V C ++ N +GFV + A+KE+NG M+ +P+ V L+ R
Sbjct: 347 MFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA-QR 405
Query: 704 VRQRXGH 724
+R H
Sbjct: 406 KEERQAH 412
Score = 55.2 bits (127), Expect = 4e-08
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 17/160 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 415
+++G+L E+ L LF + V + R+ Y +V+ N + A+++LN
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106
Query: 416 GELVHGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKFGTVVEC--- 577
+ + I+I S + PST + +F+ NL + E F FGT++ C
Sbjct: 107 YAPIRDRPIRIML--SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVA 164
Query: 578 -DIV---RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 685
D+V + YGFV + AI +LNGM+++ + + V
Sbjct: 165 MDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 415
+++ NL D + L+ +F +YG V C ++ N +GFV N + A++ +N
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
Query: 416 GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAP 532
G+++ + + + A+ ++ +F + T +P
Sbjct: 390 GKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSP 428
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +2
Query: 437 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------Y 595
A+ AA + + P + ++VG+L + +LF + V + R+ Y
Sbjct: 28 AVAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGY 87
Query: 596 GFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 694
+V+ D + A++ LN + +P+++ LS
Sbjct: 88 AYVNFANPEDASRAMESLNYAPIRDRPIRIMLS 120
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 59.7 bits (138), Expect = 2e-09
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 424
+++GN+ + TE L+ +F G V C ++R +YGFVH + + AI +LNG
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 425 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV---- 586
+ GQ IK+ A ++ ++ IFVG+L+ + + F + T + ++
Sbjct: 116 LFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQK 175
Query: 587 ----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 697
R +GFV D AI E+ G + + ++ +T
Sbjct: 176 TGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWAT 216
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 59.3 bits (137), Expect = 3e-09
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 30/174 (17%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
+++IGN+ T L L E++G V + ++ R +GF M++ + ++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 410 LNGELVHGQAIKIEAAKSRKAPSTPTT--------------KIFVGNLTDKTRAPEVREL 547
LNG V G+ IK+ + A S + K++VGNL + L
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENL 196
Query: 548 FQKFGTVVECDIVR--------NYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 685
F + G VV + R +GFV + DV AI LN +++GQ ++V
Sbjct: 197 FSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Frame = +2
Query: 476 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 631
S ++++GN+ ++ +L ++ G V + ++ R +GF + + D N
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 632 DAIKELNGMMVDGQPMKVQLS 694
+++LNG V+G+ +KV ++
Sbjct: 132 AVVEKLNGNTVEGREIKVNIT 152
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 57.2 bits (132), Expect = 1e-08
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNL-NGELVHG 433
+++GN T +DL LF K+G V D+ Y FV+ E+E+ +AI+ N +G
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGYG 63
Query: 434 -QAIKIEAAK----------SRKAPST--PTTKIFVGNLTD-KTRAPEVRELFQKFGTVV 571
+ + +E AK KA S PT +FV N +TR ++ F+ +G V+
Sbjct: 64 RRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVL 123
Query: 572 ECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 715
+ RN+ FV D A+ + + + + V+ + +R
Sbjct: 124 NVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGER 171
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 56.8 bits (131), Expect = 1e-08
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
KIF+G L+ +TT A+ F KYG + + I+ R +GFV + V + IQ
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 410 LNGELVHGQAIKIEAAKSRKAPST---PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 580
+ ++ G+ ++I+ R + S+ T KIFVG + E +E F +FG + E
Sbjct: 102 -DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQ 160
Query: 581 IVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 688
I+R+ +GFV ++ V+ + + N + + G ++++
Sbjct: 161 IMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIK 204
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 56.4 bits (130), Expect = 2e-08
Identities = 39/176 (22%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Frame = +2
Query: 242 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAI 403
TG +++ NL T + L +F +G+++ C +V + +GFV + EQ A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 404 QNLNGELVHGQAIKI-----EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 568
L+G +V+G+ + + + ++ A + +T ++V NL + + LF ++GTV
Sbjct: 169 SALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTV 228
Query: 569 VECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 715
++R+ +GFV+ + A++ L G+ + + + V + + +R
Sbjct: 229 SSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERR 284
Score = 56.4 bits (130), Expect = 2e-08
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 30/176 (17%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 415
+++ NL + T+ L LF +YGTV ++R+ +GFV+ N + ++A+++L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 416 G------ELVHGQAIKIEAAKSR----------KAPSTPTTKIFVGNLTDKTRAPEVREL 547
G +L G+A+K + + P+ + ++V NL++ +RE+
Sbjct: 264 GLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREI 323
Query: 548 FQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 694
F +G +V ++ + +GFV + A + LNG +VDG+P+ V+++
Sbjct: 324 FGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 415
+++ NLS+ E LR +F YG +V ++ + +GFV N + ++A + LN
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 416 GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAP 532
G LV G+ I + A+ ++ + F T+AP
Sbjct: 366 GFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQYTQAP 404
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 54.0 bits (124), Expect = 1e-07
Identities = 41/182 (22%), Positives = 88/182 (48%), Gaps = 32/182 (17%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
++++GNL T ++L +F + GTVV+ IV R +GFV M + + +EA+Q
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 410 LNGELVHGQAIKI-----------EAAKSR-----KAPSTPTTKIFVGNLTDKTRAPEVR 541
N + G+ +K+ E +++ ++ K++ GNL + ++
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 542 ELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 697
+ F V+ ++ R +GF+ ++ +V A+ +NG+ V+G+ +++ L++
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLAS 296
Query: 698 SR 703
R
Sbjct: 297 ER 298
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Frame = +2
Query: 443 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYG 598
++E K S +++VGNL + E+ ++F + GTVV+ IV R +G
Sbjct: 101 EVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFG 160
Query: 599 FVHLDATGDVNDAIKELNGMMVDGQPMKV 685
FV + + + +A++ N + G+ +KV
Sbjct: 161 FVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K++ GNL T L+ F V+ ++ R +GF+ E+ + + A+
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 410 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVG 505
+NG V G+A+++ A R+ P+ + G
Sbjct: 280 MNGVEVEGRALRLNLASEREKPTVSPPSVEEG 311
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVD 667
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV D +DA L+G D
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD 70
Query: 668 GQPMKVQLSTSRVR 709
G + V+ S R
Sbjct: 71 GSRITVEFSRGAPR 84
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +2
Query: 245 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 424
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + +A L+G
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRD 68
Query: 425 VHGQAIKIEAAKSRKAP 475
G I +E SR AP
Sbjct: 69 FDGSRITVEF--SRGAP 83
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVD 667
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV D +DA L+G D
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD 70
Query: 668 GQPMKVQLSTSRVR 709
G + V+ S R
Sbjct: 71 GSRITVEASRGAPR 84
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/77 (36%), Positives = 42/77 (54%)
Frame = +2
Query: 245 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 424
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + +A L+G
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRD 68
Query: 425 VHGQAIKIEAAKSRKAP 475
G I +EA SR AP
Sbjct: 69 FDGSRITVEA--SRGAP 83
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 52.4 bits (120), Expect = 3e-07
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 19/157 (12%)
Frame = +2
Query: 242 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGRE 397
+ T K+F+G++ TE ++RP FE++G V+E ++++ FV +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 398 AIQNLNGEL-VHGQAIKIE---AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGT 565
AI+ L+ ++ + G ++ A R+ T K+FVG+L + EV E+F +FG
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGH 236
Query: 566 VVECDIVRN-------YGFVHLDATGDVNDAIKELNG 655
V + ++R+ GFV + AI LNG
Sbjct: 237 VEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Frame = +2
Query: 224 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENE 382
E + GT FK+F+G+L+ + TE ++ +F ++G V + ++R+ GFV ++
Sbjct: 202 ERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSK 261
Query: 383 QVGREAIQNLNG 418
+ AI LNG
Sbjct: 262 ETAMAAIDGLNG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 52.4 bits (120), Expect = 3e-07
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 19/157 (12%)
Frame = +2
Query: 242 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGRE 397
+ T K+F+G++ TE ++RP FE++G V+E ++++ FV +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 398 AIQNLNGEL-VHGQAIKIE---AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGT 565
AI+ L+ ++ + G ++ A R+ T K+FVG+L + EV E+F +FG
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGH 236
Query: 566 VVECDIVRN-------YGFVHLDATGDVNDAIKELNG 655
V + ++R+ GFV + AI LNG
Sbjct: 237 VEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Frame = +2
Query: 224 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENE 382
E + GT FK+F+G+L+ + TE ++ +F ++G V + ++R+ GFV ++
Sbjct: 202 ERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSK 261
Query: 383 QVGREAIQNLNG 418
+ AI LNG
Sbjct: 262 ETAMAAIDGLNG 273
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Frame = +2
Query: 224 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN 379
+S+ P T K+FI LS T+E LR FE +G +VE I+ + Y F+
Sbjct: 273 DSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTT 332
Query: 380 EQVGREAIQNLNGELVHGQAIKIEAAKSR 466
E+ A++ +NG++++G I ++ AK++
Sbjct: 333 EEAAGTALKEMNGKIINGWMIVVDVAKTK 361
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Frame = +2
Query: 467 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV------RNYGFVHLDATGD- 625
++P T K+F+ L+ T +R F+ FG +VE I+ R+ G+ L+ T +
Sbjct: 275 ESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEE 334
Query: 626 -VNDAIKELNGMMVDGQPMKVQLSTSR 703
A+KE+NG +++G + V ++ ++
Sbjct: 335 AAGTALKEMNGKIINGWMIVVDVAKTK 361
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 52.4 bits (120), Expect = 3e-07
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 31/185 (16%)
Frame = +2
Query: 224 ESKMPGTGT-FKIFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHM 373
E ++ G IF+G+L+ ++A L F EKY +V +V + YGFV
Sbjct: 189 EKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 248
Query: 374 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRKA----------PS---------TPTTKI 496
+E +A+ +NG +A++I A RK PS T T I
Sbjct: 249 GDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTI 308
Query: 497 FVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDG 670
FVG L ++++ F +FG +V I + GFV + +A+++LNG ++
Sbjct: 309 FVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGK 368
Query: 671 QPMKV 685
Q +++
Sbjct: 369 QTVRL 373
Score = 44.0 bits (99), Expect = 1e-04
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 26/175 (14%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFE--KYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 406
I++G+L + EA L F + +V ++RN YGFV E+ V + +Q
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 407 NLNGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELF-QKFG 562
NG + Q ++ A + R + P IFVG+L + E F +K+
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYP 224
Query: 563 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
+V +V + YGFV + A+ E+NG+ + M++ +T R
Sbjct: 225 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 279
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +2
Query: 251 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 406
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 407 NLNGELVHGQAIKIEAAKSR 466
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 646
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 647 LNGMMVDGQPMKVQLSTSR 703
+NG +DG+ + V + SR
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +2
Query: 251 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 406
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 407 NLNGELVHGQAIKIEAAKSR 466
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 646
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 647 LNGMMVDGQPMKVQLSTSR 703
+NG +DG+ + V + SR
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +2
Query: 251 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 406
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 407 NLNGELVHGQAIKIEAAKSR 466
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 646
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 647 LNGMMVDGQPMKVQLSTSR 703
+NG +DG+ + V + SR
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+++ LS +TTE LR FE++G ++ ++V + + F+ E E+ +AIQ
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 410 LNGELVHGQAIKIEAAKSR 466
++G+ + G+ I +E AK+R
Sbjct: 138 MHGKFLDGRVIFVEEAKTR 156
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/108 (20%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Frame = +2
Query: 404 QNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 583
+++ G L+ ++ + S P TK++V L+ +T +R+ F++FG ++ ++
Sbjct: 49 RDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNM 108
Query: 584 V--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
V + + F+ + + AI+ ++G +DG+ + V+ + +R
Sbjct: 109 VMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 51.2 bits (117), Expect = 7e-07
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 30/177 (16%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 409
K+++ +S TE D+R +FEKYG V E + ++ Y F+ + + G AI
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 410 LN------GELVHGQAIKIEAAKSR------KAPSTPTTKIFVGNLTDKTRAPEVRELFQ 553
L GE++ + EA + R + P P K++V L +T EV E+F
Sbjct: 171 LTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNP--KLYVRCLNKQTTKMEVNEVFS 228
Query: 554 KFGTVV-------ECDIVRNYGFVHLDATGDVNDAIKELNGMMV---DGQPMKVQLS 694
++G + + I R Y FV AIK LNG+ QP+ V+ +
Sbjct: 229 RYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFA 285
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 50.8 bits (116), Expect = 9e-07
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+FIG ++ E LR F KYG VV+ ++ R +GFV + + AIQ
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 410 LNGELVHGQAIKIEAAKSR 466
L+G +HG+ +K+ A R
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 640
++K+F+G + +RE F K+G VV+ ++ R +GFV ++ + AI
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 641 KELNGMMVDGQPMKVQLSTSR 703
+ L+G + G+ +KV + R
Sbjct: 99 QALDGRDLHGRVVKVNYANDR 119
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 50.8 bits (116), Expect = 9e-07
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVE--------CDIVRNYGF---VHMENE--QVGR 394
++FIGN+ TE + R + E G VE + RN GF ++ N R
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 395 EAIQNLNGELVHGQAIKIEAAKSRKAP-----STPTTKIFVGNLTDKTRAPEVRELFQKF 559
+ + + N +L G A + A + +P + ++V N+ + T +++ELFQ+
Sbjct: 257 QKMIDSNFKL-EGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRH 315
Query: 560 GTVVECDIV------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 715
G V + R++GFVH A+K+ V+GQP++V L+ + ++
Sbjct: 316 GEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
Score = 45.6 bits (103), Expect = 3e-05
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Frame = +2
Query: 233 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 388
+P G+ ++FIG L E DLR L E+ G + E ++++ Y FV + + V
Sbjct: 111 LPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDV 169
Query: 389 GREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 568
++AI+ L+ + G+ I+ ++++ ++F+GN+ E R++ + G
Sbjct: 170 AQKAIEELHSKEFKGKTIRCSLSETK-------NRLFIGNIPKNWTEDEFRKVIEDVGPG 222
Query: 569 VE 574
VE
Sbjct: 223 VE 224
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 50.8 bits (116), Expect = 9e-07
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVEC--------DIVRNYGFVHMENEQVGREAIQNL 412
+++G L + +E L LF + G VV ++ +NYGF+ +E+ AI+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 413 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-- 586
N +HG+ I++ A K +F+GNL + + F FG + +
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMR 146
Query: 587 -------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 685
R +GF+ D+ + AI+ + G + + + V
Sbjct: 147 DPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITV 186
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 640
++K+FVG L+ T +++ F FG V E ++ R +GFV N+AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 641 KELNGMMVDGQPMKVQLSTSR 703
KE++G ++G+ ++V L+T R
Sbjct: 94 KEMDGKELNGRQIRVNLATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 640
++K+FVG L+ T +++ F FG V E ++ R +GFV N+AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 641 KELNGMMVDGQPMKVQLSTSR 703
KE++G ++G+ ++V L+T R
Sbjct: 94 KEMDGKELNGRQIRVNLATER 114
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +2
Query: 272 LSDKTTEADLRPLFEKYGTVV---ECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAI 442
LS TT+ LR LF + ++ + + +GF+ E+E ++A++ LNG++V+G+ I
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
Query: 443 KIEAAKSRKAPST 481
+E AK +AP+T
Sbjct: 138 FVETAKEVEAPTT 150
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 509 LTDKTRAPEVRELFQKFGTVV---ECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPM 679
L+ T +R+LF F ++ + + +GF+ ++ D A+K LNG +V+G+ +
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
Query: 680 KVQ 688
V+
Sbjct: 138 FVE 140
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 50.0 bits (114), Expect = 2e-06
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNL 412
K+F+ NL + D+ LF + GTV +I+R + FV M + + + AI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 413 NGELVHGQAIKIEAAKSRK-------------APSTPTTKIFVGNLTDKTRAPEVRELFQ 553
+ V G+ I + A+ K AP K++V NL K R+ +RELF
Sbjct: 156 DTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFT 215
Query: 554 KFG-TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 694
V +V YGFV + +AI +LNG + G+P+ ++ S
Sbjct: 216 AADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
Score = 33.1 bits (72), Expect = 0.19
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +2
Query: 227 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYG-TVVECDIV--------RNYGFVHMEN 379
S PG K+++ NL+ K LR LF V +V YGFV
Sbjct: 186 SPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFAT 245
Query: 380 EQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTD 517
+ AI LNG+ + G+ I ++ + + S + N ++
Sbjct: 246 REEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASE 291
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +2
Query: 476 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 640
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 641 KELNGMMVDGQPMKVQLS 694
+G DG ++V+L+
Sbjct: 63 HGRDGYDFDGHRLRVELA 80
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 421
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 422 LVHGQAIKIEAAKSRKAPSTPTTKIFVG 505
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +2
Query: 476 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 640
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 641 KELNGMMVDGQPMKVQLS 694
+G DG ++V+L+
Sbjct: 63 HGRDGYDFDGHRLRVELA 80
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 421
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 422 LVHGQAIKIEAAKSRKAPSTPTTKIFVG 505
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +2
Query: 476 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 640
S + ++VGNL R EV +LF K+G VV+ D+ Y FV D D DAI
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
Query: 641 KELNGMMVDGQPMKVQLS 694
+G DG ++V+L+
Sbjct: 63 HGRDGYDFDGHRLRVELA 80
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 421
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 422 LVHGQAIKIEAAKSRKAPSTPTTKIFVG 505
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 49.6 bits (113), Expect = 2e-06
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 42/196 (21%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+GNL A L LFE G V +++ R +GFV M + A Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 410 LNGELVHGQAI---------KIEAAKSRKAPST-----------------PTTKIFVGNL 511
NG + G+ + K E SR S+ +++VGNL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 512 TDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVD 667
+ + LF + G VVE ++ + +GFV D++ +V +AIK L+G +D
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 668 GQPMKVQLSTSRVRQR 715
G+ ++V + +R +R
Sbjct: 272 GRQIRVSEAEARPPRR 287
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Frame = +2
Query: 449 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 604
+ A ++ + K+FVGNL + ++ +LF+ G V +++ R +GFV
Sbjct: 78 DVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
Query: 605 HLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRXG 721
+ + +V A ++ NG +DG+P++V ++ G
Sbjct: 138 TMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDG 176
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 394
G+G ++++GNLS + L LF + G VVE ++ + +GFV ++ Q +
Sbjct: 201 GSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 395 EAIQNLNGELVHGQAIKIEAAKSR 466
AI++L+G + G+ I++ A++R
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAEAR 283
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 49.2 bits (112), Expect = 3e-06
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
IF+G+L+ + T+ L F+ YG+V +V + YGFV +E A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 410 LNGELVHGQAIKIEAAKSRKA-PSTPT-----------------TKIFVGNLTDKTRAPE 535
+NG+ + ++I A ++ A P P T IFVG L E
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDE 275
Query: 536 VRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 709
++ +F +FG ++ I + GFV A+ LNG + GQ +++ S +
Sbjct: 276 LKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNK 335
Query: 710 Q 712
Q
Sbjct: 336 Q 336
Score = 42.3 bits (95), Expect = 3e-04
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 26/179 (14%)
Frame = +2
Query: 227 SKMPGTGTF--KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHME 376
S+ PG+ + ++IG+L E + +F + G ++RN YGF+
Sbjct: 50 SQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFV 109
Query: 377 NEQVGREAIQNLNGELVHG--QAIKIE-----AAKSRKAPSTPTTKIFVGNLTDKTRAPE 535
+ V +Q NG + Q ++ A + R P IFVG+L +
Sbjct: 110 SHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYM 169
Query: 536 VRELFQK-FGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 685
+ + F+ +G+V +V + YGFV + A+ E+NG +PM++
Sbjct: 170 LSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+FIG LS TTE L F K G VVE IV + +GFV + ++A+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 410 LNGELVHGQAIKIEAAKSRKA 472
NG+ ++G+ I ++ AK++++
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQS 115
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 643
+K+F+G L+ T + E F K G VVE IV + +GFV + + A+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 644 ELNGMMVDGQPMKVQLSTSR 703
E NG ++G+ + V + ++
Sbjct: 94 EFNGQQLNGRTIFVDYAKAK 113
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Frame = +2
Query: 500 VGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNG 655
V NL++ TR P++ ELF+ FG V C + R +GFV + D AI +LNG
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
Query: 656 MMVDGQPMKVQLSTSRVR 709
D ++V+ ST + +
Sbjct: 238 YGYDNLILRVEWSTPKTQ 255
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +2
Query: 263 IGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNLNG 418
+ NLS+ T DL LF +G V C + R +GFV + + + AI LNG
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
Query: 419 ELVHGQAIKIE 451
+++E
Sbjct: 238 YGYDNLILRVE 248
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 49.2 bits (112), Expect = 3e-06
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 35/173 (20%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 403
K+FIG +S T E L+ F +G V+E I+ R +GFV + V I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 404 -QNLNGELVHGQAI----------KIEAAKSRKAPSTP--TTKIFVGNLTDKTRAPEVRE 544
N++G LV + + ++ + +P P T KIFVG L + +
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 545 LFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 667
F++FGT + ++ R +GF+ D+ V + ELNG MV+
Sbjct: 127 YFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVE 179
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +2
Query: 236 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 391
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 392 REAIQNLNGELVHGQAIKIEAAKSRKAPSTPT 487
+ + EL +G+ ++++ A ++ P+
Sbjct: 163 EKVLLKTFHEL-NGKMVEVKRAVPKELSPGPS 193
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 49.2 bits (112), Expect = 3e-06
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 35/173 (20%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 403
K+FIG +S T E L+ F +G V+E I+ R +GFV + V I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 404 -QNLNGELVHGQAI----------KIEAAKSRKAPSTP--TTKIFVGNLTDKTRAPEVRE 544
N++G LV + + ++ + +P P T KIFVG L + +
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 545 LFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 667
F++FGT + ++ R +GF+ D+ V + ELNG MV+
Sbjct: 127 YFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVE 179
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +2
Query: 236 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 391
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 392 REAIQNLNGELVHGQAIKIEAAKSRKAPSTPT 487
+ + EL +G+ ++++ A ++ P+
Sbjct: 163 EKVLLKTFHEL-NGKMVEVKRAVPKELSPGPS 193
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 394
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+ +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 395 EAIQNLNGELVHGQAIKIEAAKSR 466
+AI+ +NG+ + G++I + A+SR
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQSR 87
Score = 35.5 bits (78), Expect = 0.036
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 646
+ FVG L T + F ++G V++ I+ R +GFV + DAI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 647 LNGMMVDGQPMKVQLSTSR 703
+NG +DG+ + V + SR
Sbjct: 69 MNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 394
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+ +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 395 EAIQNLNGELVHGQAIKIEAAKSR 466
+AI+ +NG+ + G++I + A+SR
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQSR 87
Score = 35.5 bits (78), Expect = 0.036
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 646
+ FVG L T + F ++G V++ I+ R +GFV + DAI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 647 LNGMMVDGQPMKVQLSTSR 703
+NG +DG+ + V + SR
Sbjct: 69 MNGQDLDGRSITVNEAQSR 87
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 49.2 bits (112), Expect = 3e-06
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Frame = +2
Query: 245 GTFKIFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAI 403
G ++++GNL +E DLR +FE +G+V E + + +GFV + R A+
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342
Query: 404 QNLNGEL-VHGQAIKIEAAKSR-KAPSTPTTKIFVGNLTD 517
NLNG+L + G+AIK+ A + + P T+ G+L D
Sbjct: 343 -NLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQT-TGDLDD 380
Score = 35.9 bits (79), Expect = 0.027
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 412
+F ++ + TE D+ F + G V + I+ R G+V + AI L
Sbjct: 184 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-L 242
Query: 413 NGELVHGQAIKIEAAKSRKAPSTPTT-----------------KIFVGNLTDKTRAPEVR 541
+G+ + GQ + ++ +++ K TT +++VGNL ++R
Sbjct: 243 SGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLR 302
Query: 542 ELFQKFGTVV-------ECDIVRNYGFVHLDATGDVNDAIKELNGMM-VDGQPMKVQLST 697
++F+ FG+V E + + +GFV D +A+ LNG + + G+ +KV T
Sbjct: 303 KVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLNGQLEIAGRAIKVSAVT 361
Query: 698 SR 703
+
Sbjct: 362 DQ 363
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +2
Query: 476 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 640
S + I+VGNL R EV +LF K+G VV+ D+ Y FV + D +DAI
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAI 62
Query: 641 KELNGMMVDGQPMKVQLS 694
+G DG ++V+L+
Sbjct: 63 YGRDGYDFDGHHLRVELA 80
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 421
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 422 LVHGQAIKIEAAKSRKAPS 478
G +++E A + S
Sbjct: 69 DFDGHHLRVELAHGGRRSS 87
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +2
Query: 476 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAI 640
S + I+VGNL R EV +LF K+G VV+ D+ Y FV + D +DAI
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAI 62
Query: 641 KELNGMMVDGQPMKVQLS 694
+G DG ++V+L+
Sbjct: 63 YGRDGYDFDGHHLRVELA 80
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 421
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 422 LVHGQAIKIEAAKSRKAPS 478
G +++E A + S
Sbjct: 69 DFDGHHLRVELAHGGRRSS 87
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 48.8 bits (111), Expect = 4e-06
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 31/185 (16%)
Frame = +2
Query: 224 ESKMPGTGT-FKIFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHM 373
E ++ G IF+G+LS ++ L F EKY +V +V + YGFV
Sbjct: 187 EKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Query: 374 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRKA----------PSTPTTK---------I 496
+E +A+ +NG +A++I A RK P+ T+ I
Sbjct: 247 GDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTI 306
Query: 497 FVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDG 670
FVG L ++++ F +FG +V I + GFV + +A+++LNG ++
Sbjct: 307 FVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGK 366
Query: 671 QPMKV 685
Q +++
Sbjct: 367 QTVRL 371
Score = 41.1 bits (92), Expect = 7e-04
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGT--VVECDIVRN--------YGFVHMENEQVGREAIQ 406
I++G+L EA L F +V ++RN YGFV E+ V + ++
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 407 NLNGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELF-QKFG 562
NG + Q ++ A + R + P IFVG+L+ + E F +K+
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 563 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
+V +V + YGFV + A+ E+NG+ + M++ +T R
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 277
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +2
Query: 248 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 403
T+ + + N++ +TT DL PLF KYG VV+ I R+ + FV + + +A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 404 QNLNGELVHGQAIKIEAAK 460
+ L+G +V G+ I ++ AK
Sbjct: 75 ERLDGRVVDGREITVQFAK 93
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 640
T + V N+T +T A ++ LF K+G VV+ I R+ + FV + + A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 641 KELNGMMVDGQPMKVQLS 694
+ L+G +VDG+ + VQ +
Sbjct: 75 ERLDGRVVDGREITVQFA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +2
Query: 248 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 403
T+ + + N++ +TT DL PLF KYG VV+ I R+ + FV + + +A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 404 QNLNGELVHGQAIKIEAAK 460
+ L+G +V G+ I ++ AK
Sbjct: 75 ERLDGRVVDGREITVQFAK 93
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 640
T + V N+T +T A ++ LF K+G VV+ I R+ + FV + + A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 641 KELNGMMVDGQPMKVQLS 694
+ L+G +VDG+ + VQ +
Sbjct: 75 ERLDGRVVDGREITVQFA 92
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.4 bits (110), Expect = 5e-06
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 412
++IG+L E L F + G +V ++RN YGF+ + +Q
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 413 NGELVHGQAIKIEA-----AKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ-KFGTVVE 574
NG + G + +K + P IFVG+L ++E F+ + +V
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 145
Query: 575 CDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
+V + YGFV + N A+ E+NG+ +PM++ +T +
Sbjct: 146 AKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK 196
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--VRNYGFVHMENEQVGREAIQNLNGELVH 430
I + NL TE +L+ F + G V+ I + YG+V + EA+Q + G+++
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIG 298
Query: 431 GQAIKIEAAKS 463
QA++I +K+
Sbjct: 299 QQAVRISWSKN 309
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Frame = +2
Query: 221 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHM 373
S K+ IF+G+L+ T+ L+ F Y +V +V + YGFV
Sbjct: 106 SGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKF 165
Query: 374 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRK 469
E A+ +NG + ++I AA +K
Sbjct: 166 AEESERNRAMAEMNGLYCSTRPMRISAATPKK 197
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 48.4 bits (110), Expect = 5e-06
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 32/177 (18%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 409
++++ N+ A L +F+ +GTV+ ++ RN G+V M + + AI +
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 410 LNGELVHGQAIKIEAAK-----SRKAP----STPTT--------KIFVGNLTDKTRAPEV 538
L+G V G+ +++ + +R+ P STP K++VGNL T+ +
Sbjct: 169 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 228
Query: 539 RELFQKFGTVVECDIV------RNYGFVHLDAT-GDVNDAIKELNGMMVDGQPMKVQ 688
R F KFGT+V ++ RN F L T G+ DA NG +G+ + V+
Sbjct: 229 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVR 285
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 48.0 bits (109), Expect = 6e-06
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 37/175 (21%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 409
K+FIG +S T E LR F YG VVE I+R+ +GF+ + V I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 410 ---LNGELVHG-QAIKIEAAKSRKAPSTP-------------TTKIFVGNLTDKTRAPEV 538
++G V +A+ + + K ++P T KIFVG L E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 539 RELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 667
+ F +FGT+ + ++ R +GF+ D+ V+ + ELNG +V+
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Score = 35.9 bits (79), Expect = 0.027
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 382
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 383 QVGREAIQNLNGELV 427
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 48.0 bits (109), Expect = 6e-06
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 37/175 (21%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 409
K+FIG +S T E LR F YG VVE I+R+ +GF+ + V I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 410 ---LNGELVHG-QAIKIEAAKSRKAPSTP-------------TTKIFVGNLTDKTRAPEV 538
++G V +A+ + + K ++P T KIFVG L E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 539 RELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 667
+ F +FGT+ + ++ R +GF+ D+ V+ + ELNG +V+
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Score = 35.9 bits (79), Expect = 0.027
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 382
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 383 QVGREAIQNLNGELV 427
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 48.0 bits (109), Expect = 6e-06
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 37/175 (21%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 409
K+FIG +S T E LR F YG VVE I+R+ +GF+ + V I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 410 ---LNGELVHG-QAIKIEAAKSRKAPSTP-------------TTKIFVGNLTDKTRAPEV 538
++G V +A+ + + K ++P T KIFVG L E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 539 RELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI----KELNGMMVD 667
+ F +FGT+ + ++ R +GF+ D+ V+ + ELNG +V+
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Score = 35.9 bits (79), Expect = 0.027
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 382
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 383 QVGREAIQNLNGELV 427
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 47.6 bits (108), Expect = 8e-06
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 38/188 (20%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+FIG +S +T+E LR F +G V+E I+ R +GFV + V +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-- 64
Query: 410 LNGELVHGQAIKIEAAKSR-------KAPST------PTT--KIFVGNLTDKTRAPEVRE 544
L ++ G+ ++ + A R K+ S+ P+ KIFVG L E ++
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKK 124
Query: 545 LFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK----ELNGMMVD---GQPM 679
F +FG + + ++ R +GF+ D+ V+ ++ ELNG MV+ P
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Query: 680 KVQLSTSR 703
+ L+T R
Sbjct: 185 DMALNTMR 192
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Frame = +2
Query: 236 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 388
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 159
Query: 389 GREAIQNLNGELVHGQAIKIEAA 457
+ +Q EL +G+ ++++ A
Sbjct: 160 VDKVLQKTFHEL-NGKMVEVKLA 181
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 47.6 bits (108), Expect = 8e-06
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 38/188 (20%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+FIG +S +T+E LR F +G V+E I+ R +GFV + V +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-- 64
Query: 410 LNGELVHGQAIKIEAAKSR-------KAPST------PTT--KIFVGNLTDKTRAPEVRE 544
L ++ G+ ++ + A R K+ S+ P+ KIFVG L E ++
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKK 124
Query: 545 LFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK----ELNGMMVD---GQPM 679
F +FG + + ++ R +GF+ D+ V+ ++ ELNG MV+ P
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Query: 680 KVQLSTSR 703
+ L+T R
Sbjct: 185 DMALNTMR 192
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Frame = +2
Query: 236 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 388
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 159
Query: 389 GREAIQNLNGELVHGQAIKIEAA 457
+ +Q EL +G+ ++++ A
Sbjct: 160 VDKVLQKTFHEL-NGKMVEVKLA 181
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 47.6 bits (108), Expect = 8e-06
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +2
Query: 251 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 406
++ FIG L+ T++ LR FEKYG +VE +V R +GF+ + ++ EAI
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 407 NLNGELVHGQAIKIEAAK 460
+NG + G+ I ++ A+
Sbjct: 67 AMNGMDLDGRTITVDKAQ 84
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Frame = +2
Query: 482 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 637
P + F+G L T +R+ F+K+G +VE +V R +GF+ D +++A
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
Query: 638 IKELNGMMVDGQPMKV 685
I +NGM +DG+ + V
Sbjct: 65 IAAMNGMDLDGRTITV 80
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 47.6 bits (108), Expect = 8e-06
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 430
IF+G L TE DL F +G VV I + GFV N Q EAI NLNG ++
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 431 GQAIKIEAAKS 463
+++ +S
Sbjct: 389 KNTVRLSWGRS 399
Score = 40.7 bits (91), Expect = 0.001
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 24/173 (13%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 412
+++G+L E L F V ++RN YGFV + EA+Q+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 413 NGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ-KFGTV 568
+G + Q ++ A + R + + P IFVG+L + E F ++ +V
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 569 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
+V + YGFV + + A+ E+NG + M+V ++T +
Sbjct: 241 KGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPK 293
Score = 31.5 bits (68), Expect = 0.59
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 37/189 (19%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
IF+G+L+ ++A L F +Y +V +V + YGFV +E A+
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 410 LNGELVHGQAIKIEAAKSRKAPS--------------------------TPTTKIFVGNL 511
+NG + +++ A ++A + + + IFVG L
Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334
Query: 512 TDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 685
++ + F FG VV I + GFV +AI LNG ++ +++
Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRL 394
Query: 686 QLSTSRVRQ 712
S +Q
Sbjct: 395 SWGRSPNKQ 403
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Frame = +2
Query: 224 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENE 382
+ + P + +F+ NLS +T +D+ F G VV ++ N YGFV +
Sbjct: 235 DERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASA 294
Query: 383 QVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTP 484
++A++N NGE +H I I+ AK+ P P
Sbjct: 295 DETKKALENKNGEYLHDHKIFIDVAKTAPYPPGP 328
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +2
Query: 494 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY-------GFVHLDATGDVNDAIKELN 652
+FV NL +T+ P + + F+K G VV ++ N GFV + + +A+++ N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 653 GMMVDGQPMKVQLSTSR 703
G +D + + ++ +
Sbjct: 189 GECLDNNKIFLDVANKK 205
Score = 35.5 bits (78), Expect = 0.036
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 415
+F+ NL +T ++ F+K G VV ++ N GFV + EA+Q N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 416 GELVHGQAIKIEAAKSRKAPSTP 484
GE + I ++ A ++KA P
Sbjct: 189 GECLDNNKIFLDVA-NKKATYLP 210
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 415
+F+ NLS +T + + F+ VV ++ N+ GFV + ++A+Q +N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 416 GELVHGQAIKIEAAKSRKAPSTP 484
GE + + I ++ + P P
Sbjct: 551 GENLRSREIFLDVVELAPYPLRP 573
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 47.2 bits (107), Expect = 1e-05
Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 41/189 (21%)
Frame = +2
Query: 224 ESKMPGTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHME 376
E KM K+FIG +S T E L+ F KYG +VE I+R+ +GF+
Sbjct: 5 EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA 64
Query: 377 NEQVGREAIQN---LNGELVHG---------QAIKIEAAKSRK-APS-------TPTTKI 496
+ V I + ++G V Q +K A+ +PS T KI
Sbjct: 65 DPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKI 124
Query: 497 FVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDV----NDAI 640
FVG L E + F +FGT+ + ++ R +GF+ D+ V +
Sbjct: 125 FVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTF 184
Query: 641 KELNGMMVD 667
ELNG MV+
Sbjct: 185 HELNGKMVE 193
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 394
G T KIF+G L TEA+ + F+++GT+ + ++ R +GF+ ++E+
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVD 177
Query: 395 EAIQNLNGELVHGQAIKIEAAKSRKAPS-TPTTKIFVG 505
+ EL +G+ ++++ A ++ S TP +G
Sbjct: 178 MVLHKTFHEL-NGKMVEVKRAVPKELSSTTPNRSPLIG 214
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 640
+ ++FV L+ T +R+LF FG + E ++R+ +GF+ D+ D A+
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 641 KELNGMMVDGQPMKVQLSTSRVRQRXG 721
K L+G +VDG+ + V+++ + R G
Sbjct: 66 KSLDGKIVDGRLIFVEVAKNAEEVRAG 92
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
KIF+G +S T E LR F KYG VV+ I+ R + FV + + A+Q
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 410 LNGELVHGQAIKIEAAKSR 466
L+G+ +HG+ I++ A R
Sbjct: 94 LDGQDLHGRRIRVNYATER 112
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 640
++KIFVG ++ T +RE F K+G VV+ I+ R + FV +T + ++A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 641 KELNGMMVDGQPMKVQLSTSR 703
+L+G + G+ ++V +T R
Sbjct: 93 -QLDGQDLHGRRIRVNYATER 112
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Frame = +2
Query: 449 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 604
++A + +P K+FVGNL+ + ++ +LF+ G V +++ R +GFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 605 HLDATGDVNDAIKELNGMMVDGQPMKV 685
+ +V A ++ NG +G+P++V
Sbjct: 146 TMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 394
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q +
Sbjct: 246 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 395 EAIQNLNGELVHGQAIKIEAAKSR 466
+AI +LNG + G+ I++ A++R
Sbjct: 305 KAINSLNGADLDGRQIRVSEAEAR 328
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 646
+++VGNL+ + LF + G VVE ++ + +GFV L ++ +V AI
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 647 LNGMMVDGQPMKVQLSTSR 703
LNG +DG+ ++V + +R
Sbjct: 310 LNGADLDGRQIRVSEAEAR 328
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+GNLS A L LFE G V +++ R +GFV M A Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 410 LNGELVHGQAIKIEA 454
NG G+ +++ A
Sbjct: 160 FNGYEFEGRPLRVNA 174
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Frame = +2
Query: 449 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 604
++A + +P K+FVGNL+ + ++ +LF+ G V +++ R +GFV
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Query: 605 HLDATGDVNDAIKELNGMMVDGQPMKV 685
+ +V A ++ NG +G+P++V
Sbjct: 146 TMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 394
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q +
Sbjct: 254 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 395 EAIQNLNGELVHGQAIKIEAAKSR 466
+AI +LNG + G+ I++ A++R
Sbjct: 313 KAINSLNGADLDGRQIRVSEAEAR 336
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 646
+++VGNL+ + LF + G VVE ++ + +GFV L ++ +V AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 647 LNGMMVDGQPMKVQLSTSR 703
LNG +DG+ ++V + +R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+GNLS A L LFE G V +++ R +GFV M A Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 410 LNGELVHGQAIKIEA 454
NG G+ +++ A
Sbjct: 160 FNGYEFEGRPLRVNA 174
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGREAIQNL 412
+++G + TE DL +F +YG +V+ +++R+ G F+ E+++ A+ NL
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 413 NGELVHGQAIKIE 451
NG LV G+ IK++
Sbjct: 98 NGALVLGRTIKVD 110
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 46.0 bits (104), Expect = 3e-05
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 412
+++G+L E L F G V ++RN YGFV + E +QN
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 413 NGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ-KFGTV 568
+G ++ Q +I A + R + P +FVG+L+ + E F ++ +V
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 569 VECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
+V + YGFV + + A+ E+NG + M+V ++T +
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 430
IF+G + + DLR F ++G VV I + GFV + + +AI++LNG ++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIG 382
Query: 431 GQAIKIEAAKS 463
+++ +S
Sbjct: 383 KNTVRLSWGRS 393
Score = 37.9 bits (84), Expect = 0.007
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 428 HGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGF 601
HG + ST T IFVG + ++R+ F +FG VV I + GF
Sbjct: 302 HGSNGSMGYGSQSDGESTNAT-IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGF 360
Query: 602 VHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRXG 721
V DAI+ LNG ++ +++ S +Q G
Sbjct: 361 VQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQWRG 400
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
+F+G+LS T+ L F ++Y +V +V + YGFV +E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 410 LNGELVHGQAIKIEAAKSRKA 472
+NG + +++ A ++A
Sbjct: 264 MNGAYCSNRQMRVGIATPKRA 284
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 46.0 bits (104), Expect = 3e-05
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 19/147 (12%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 415
+ + NLS T A ++ F VV +V N YGFV + +A++ N
Sbjct: 160 VIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKN 219
Query: 416 GELVHGQAIKIEAAKSRKAP-----STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 580
GE +H KI K ++P + T +FV NL D + ++ F+ G VV
Sbjct: 220 GEYLHNH--KILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVR 277
Query: 581 IVRN-------YGFVHLDATGDVNDAI 640
++ N +GFV + + A+
Sbjct: 278 LIVNSQGKHAGWGFVEFASANEAEKAL 304
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Frame = +2
Query: 224 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMEN 379
+SK G +F+G LS TTE LR + KYG + +VR+ YGFV E
Sbjct: 55 DSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYET 114
Query: 380 EQVGREAIQNLNGELVHGQAIKIEAAKSRKAP 475
E+ A ++ + L+ G+ I ++ + + P
Sbjct: 115 EKEMLRAYEDAHHSLIDGREIIVDYNRQQLMP 146
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Frame = +2
Query: 467 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATG 622
KA P +FVG L+ T +RE+ K+G + +VR+ YGFV +
Sbjct: 57 KAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEK 116
Query: 623 DVNDAIKELNGMMVDGQPMKVQLSTSRV 706
++ A ++ + ++DG+ + V + ++
Sbjct: 117 EMLRAYEDAHHSLIDGREIIVDYNRQQL 144
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +2
Query: 494 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNGM 658
I+VGNL R E+ ++F K+G +V+ ++ Y FV + + D DAIK +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 659 MVDGQPMKVQLS 694
+DG ++V+L+
Sbjct: 69 NLDGCRLRVELA 80
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +2
Query: 233 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGRE 397
M G + I++GNL E ++ +F KYG +V+ ++ Y FV E+ + +
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 398 AIQNLNGELVHGQAIKIEAAKSRKAPST 481
AI+ +G + G +++E A + S+
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSS 88
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 430
IF+G + TE DL+ +F ++G +V I + GFV N +A+ LNG +
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLG 339
Query: 431 GQAIKIEAAKS 463
GQ+I++ +S
Sbjct: 340 GQSIRLSWGRS 350
Score = 42.3 bits (95), Expect = 3e-04
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
+F+G+L+ T+ L F+ Y +V +V + YGFV +E A+
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 410 LNGELVHGQAIKIEAAKSRK----------------APSTPT-TKIFVGNLTDKTRAPEV 538
+NG+ + ++ A ++K S PT T IFVG + ++
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 539 RELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTS 700
+ +F +FG +V I + GFV A+ LNG + GQ +++ S
Sbjct: 295 KSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRS 350
Score = 39.5 bits (88), Expect = 0.002
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 25/177 (14%)
Frame = +2
Query: 227 SKMPGT-GTFK-IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHME 376
S+ PG+ G + ++IG+L E L +F G ++RN YGF+
Sbjct: 70 SQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFV 129
Query: 377 NEQVGREAIQNLNGELVHG--QAIKIEAAK----SRKAPSTPTTKIFVGNLTDKTRAPEV 538
N +Q NG + QA ++ A+ R+ P +FVG+L +
Sbjct: 130 NHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHML 189
Query: 539 RELFQK-FGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMK 682
E F+ + +V +V + YGFV + A+ E+NG +PM+
Sbjct: 190 TETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
+IF+G LS TE L F++YG + EC I+ R +GF+ + + +AI++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 410 LNGELVHGQAIKIEAAKSR 466
++G + + I + A+ +
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Frame = +2
Query: 458 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 613
K R+ ++IFVG L+ ++ F ++G + EC I+ R +GF+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 614 ATGDVNDAIKELNGMMVDGQPMKVQLSTSRV 706
+DAIK ++G + + + V + +V
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKAEPKV 92
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
+IF+G LS TE L F++YG + EC I+ R +GF+ + + +AI++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 410 LNGELVHGQAIKIEAAKSR 466
++G + + I + A+ +
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Frame = +2
Query: 458 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 613
K R+ ++IFVG L+ ++ F ++G + EC I+ R +GF+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 614 ATGDVNDAIKELNGMMVDGQPMKVQLSTSRV 706
+DAIK ++G + + + V + +V
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKAEPKV 92
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = +2
Query: 494 IFVGNLTDKTRAPEVRELFQKFGTVVECDI-----VRNYGFVHLDATGDVNDAIKELNGM 658
I+VGNL R EV +LF K+G +V+ D+ Y FV + D +DAI +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 659 MVDGQPMKVQLS 694
DG ++V+++
Sbjct: 69 DFDGCRLRVEIA 80
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 421
I++GNL + ++ LF KYG +V+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 422 LVHGQAIKIEAA 457
G +++E A
Sbjct: 69 DFDGCRLRVEIA 80
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 44.4 bits (100), Expect = 8e-05
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFVHME--NEQVGREAIQNLNGELV 427
+ +GN+S + +L+ LFE++G + +N GF+ + + + + A + L +L+
Sbjct: 219 LLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLL 278
Query: 428 HGQAIKIEAAKSRKAPSTPTTK---IFVGNLTDKTRAPEVRELFQKFGTVVE 574
G + I + S++ PS T + V NL E+ L + +G V E
Sbjct: 279 RGTKLDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKE 330
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 482 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFVHLDATG--DVNDAIKELN 652
P+ + VGN++ E++ LF++FG + +N GF+ + +A + L
Sbjct: 215 PSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQ 274
Query: 653 GMMVDGQPMKVQLSTSR 703
++ G + ++ S S+
Sbjct: 275 NKLLRGTKLDIRYSISK 291
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 415
+++G L TE +R +F YG+V+ IV + YGFV N + +AI++++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 416 GELVHGQAIKIEAAKSRKAPSTP 484
G+ + G+A+++ +R P
Sbjct: 69 GKSIGGRAVRVNDVTTRGGRMNP 91
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +2
Query: 494 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELN 652
++VG L VR +F +G+V+ IV + YGFV +DAI++++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 653 GMMVDGQPMKVQLSTSR 703
G + G+ ++V T+R
Sbjct: 69 GKSIGGRAVRVNDVTTR 85
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 640
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 641 KELNGMMVDGQPMKVQLSTSR 703
E++G ++G+ ++V + R
Sbjct: 94 SEMDGKELNGRHIRVNPANDR 114
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 640
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 641 KELNGMMVDGQPMKVQLSTSR 703
E++G ++G+ ++V + R
Sbjct: 94 SEMDGKELNGRHIRVNPANDR 114
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +2
Query: 500 VGNLTDKTRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLDATGDVNDAIKELNG 655
V NL++ TR P++ ELF FG V + + R +GFV+ + D AI +LNG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 656 MMVDGQPMKVQLSTSR 703
D ++V+ +T R
Sbjct: 277 YGYDNLILRVEWATPR 292
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +2
Query: 263 IGNLSDKTTEADLRPLFEKYGTVV--------ECDIVRNYGFVHMENEQVGREAIQNLNG 418
+ NLS+ T E DL LF +G V + + R +GFV+ + + + AI LNG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 419 ELVHGQAIKIEAAKSR 466
+++E A R
Sbjct: 277 YGYDNLILRVEWATPR 292
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Frame = +2
Query: 476 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVN 631
++P++K+F+G L+ +++ F FG V E I R +GFV GD
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 632 DAIKELNGMMVDGQPMKVQLSTSRVR 709
A ++G + G+P+++ + RVR
Sbjct: 97 SAKDAMDGKGLLGRPLRISFALERVR 122
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 44.4 bits (100), Expect = 8e-05
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Frame = +2
Query: 251 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 406
F+IF+G+L +E DL+ +F G V E I++N F+ + + A++
Sbjct: 214 FEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVK 273
Query: 407 NLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPE-VRELFQKFG------- 562
L +++G+ + A++ +FVGN+ K PE +RE + +G
Sbjct: 274 ELKSPMINGKKCGVTASQDNDT-------LFVGNIC-KIWTPEALREKLKHYGVENMDDI 325
Query: 563 TVVE----CDIVRNYGFVHLDATGDVNDAIKEL 649
T+VE ++ R Y F+ + D DA K L
Sbjct: 326 TLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRL 358
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 263 IGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVHGQ 436
+ NLS T LR LF GTVV+C I ++ ++ N + A+ LN V G+
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAALA-LNNTEVFGR 413
Query: 437 AIKIEAAKS 463
A+ +E AKS
Sbjct: 414 ALNVEIAKS 422
Score = 34.7 bits (76), Expect = 0.063
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 500 VGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD-ATGDVNDAIKELNGMMVDGQP 676
V NL+ ++R+LF GTVV+C I + +++ + + A LN V G+
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAALALNNTEVFGRA 414
Query: 677 MKVQLSTS 700
+ V+++ S
Sbjct: 415 LNVEIAKS 422
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 409
K++IG LS T E L+ F + V E ++ N YGFV+ +E AI
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 410 LNGELVHGQAIKIEAAKSRKAPSTP 484
+NG+ ++G I + AK PS P
Sbjct: 92 MNGQELNGFNISVNVAKD--WPSLP 114
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAI 640
+TK+++G L+ T +++ F F V E ++ N YGFV+ + N AI
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 641 KELNGMMVDGQPMKVQLS 694
+NG ++G + V ++
Sbjct: 90 SAMNGQELNGFNISVNVA 107
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Frame = +2
Query: 218 VSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 373
+S++ T KIF+GNL+ +TT DLR FE++G VV+ ++V + YGF+
Sbjct: 1 MSQTNNHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
Query: 374 ENEQVGREAIQN 409
+ A+QN
Sbjct: 61 RDYVSTVRALQN 72
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
T TKIFVGNLT +T A ++R F++FG VV+ ++V
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVV 44
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
+IF+G LS + T+ DL F ++G +++C I+ R +GF+ + + E+I+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 410 LNGELVHGQAIKIEAAKSR 466
++G + I + A+ +
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 34.7 bits (76), Expect = 0.063
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK 643
++IFVG L+ + ++ F +FG +++C I+ R +GF+ ++++I+
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 644 ELNG 655
E++G
Sbjct: 67 EMHG 70
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Frame = +2
Query: 251 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 406
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 407 NLNG 418
+NG
Sbjct: 66 EMNG 69
Score = 35.1 bits (77), Expect = 0.048
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 646
+ FVG L T +++ F +FG V++ I+ R +GFV + DAI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 647 LNG 655
+NG
Sbjct: 67 MNG 69
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 409
++++GNLS TT+ LR F YG VV+ ++R+ +GFV + A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 410 LNGELVHGQAIKIE 451
++G+ ++G+ + ++
Sbjct: 64 MDGKELNGRRVSVK 77
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 42.3 bits (95), Expect = 3e-04
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 26/179 (14%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDI------VRNYGFVHMENEQVGREAIQNLNG 418
+++ ++ + TE L LF +G VV+C I V + F+ +E VG NL+G
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDE-VGARTALNLSG 210
Query: 419 ELVHGQAIKIEAAKSRKAPSTPT-------------TKIFVGNLTDKTRAPEVRELFQKF 559
++ +K+ +K+ AP PT I+ N+ K +++ F+
Sbjct: 211 TMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFESV 270
Query: 560 -GTVVECDIVRNY------GFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 715
G V ++ +Y GFV + A +G+++ P++V S + VR R
Sbjct: 271 CGEVYRLRLLGDYHHPTRIGFVEF-VMAESAIAALNCSGVLLGSLPIRVSPSKTPVRSR 328
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 412
+F+ L+ T + DL +F ++GTVV D++R+ Y F+ EN++ +A +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 413 NGELVHGQAIKIEAAKS 463
+ L+ + I ++ ++S
Sbjct: 305 DNALIDDRRIHVDFSQS 321
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Frame = +2
Query: 332 VECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKS--RKAPSTPTTKIFVG 505
V+ D+ +V M+ E +E + + + H A+ +E+ P +FV
Sbjct: 189 VKDDVRLEDDWVPMDEELGAQELEEVIREKAAHSSAVVLESIGDIPEAEVKPPDNVLFVC 248
Query: 506 NLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMM 661
L T ++ +F +FGTVV D++R+ Y F+ + A +++ +
Sbjct: 249 KLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNAL 308
Query: 662 VDGQPMKVQLSTS 700
+D + + V S S
Sbjct: 309 IDDRRIHVDFSQS 321
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 42.3 bits (95), Expect = 3e-04
Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 29/196 (14%)
Frame = +2
Query: 221 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHM 373
S K + + IF+G+L+ T+ L F Y +V +V + YGFV
Sbjct: 145 SGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
Query: 374 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRK------------APSTPT------TKIF 499
+E A+ +NG + ++I A S+K A T T +F
Sbjct: 205 SDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVF 264
Query: 500 VGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQ 673
VG L ++ +F ++G +V I + GFV +A++ LNG+ + G
Sbjct: 265 VGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGT 324
Query: 674 PMKVQLSTSRVRQRXG 721
+++ S ++ G
Sbjct: 325 TVRLSWGRSPSNKQSG 340
Score = 36.3 bits (80), Expect = 0.021
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 23/172 (13%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 412
++IG+L E L F G +V ++RN YGF+ + +Q
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 413 NGELVHG---QAIKIEAAK---SRKAPSTPTTKIFVGNL----TDKTRAPEVRELFQKF- 559
N + Q ++ A K +P IFVG+L TD R +
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 560 GTVVECDIV----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
G V D V + YGFV + A+ E+NG+ +PM++ + S+
Sbjct: 184 GAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK 235
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 41.9 bits (94), Expect = 4e-04
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 21/123 (17%)
Frame = +2
Query: 263 IGNLSDKTTEADLRPLFEKY---GTVVECDIVRN----------YGFVHMENEQVGREAI 403
+ NLS KTT+ L+ F K G ++ I+++ YGFV ++ +
Sbjct: 573 VKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVY 632
Query: 404 QNLNGELVHGQAIKIEAAKSRKAPST--------PTTKIFVGNLTDKTRAPEVRELFQKF 559
++L G ++ G A+ + +++++ P TK+ V N+ + E+R+LF F
Sbjct: 633 RDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPF 692
Query: 560 GTV 568
G +
Sbjct: 693 GQI 695
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 41.5 bits (93), Expect = 6e-04
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 26/179 (14%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDI------VRNYGFVHMENEQVGREAIQNLNG 418
+++ ++ TE L LF G VV+C I V + FV ++Q EA+ +L G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEAL-SLGG 201
Query: 419 ELVHGQAIKIEAAKSRKAPSTPT-------------TKIFVGNLTDKTRAPEVRELFQKF 559
++ +++ +K+ P PT I+ N+ K +VR F+
Sbjct: 202 TMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESA 261
Query: 560 -GTVVECDIVRNY------GFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 715
G V ++ + FV A+ +GM+V QP++V S + VR R
Sbjct: 262 CGEVTRLRLLGDQLHSTRIAFVEFALADSALSALN-CSGMVVGSQPIRVSPSKTPVRPR 319
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFV-----HMENEQVGREAIQ--NLN 415
+++G+L+ +TTE+DL LF +YG + + + GF H+E +EA+Q NLN
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANLN 79
Query: 416 G 418
G
Sbjct: 80 G 80
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGM 658
+ ++VG+LT +T ++ ELF ++G + + R + F++ + A + L G
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 659 MVDG 670
++G
Sbjct: 77 NLNG 80
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/58 (24%), Positives = 23/58 (39%)
Frame = +2
Query: 350 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKT 523
RN+ V + + R+ + L G L + IKI + P T + G +T
Sbjct: 399 RNFALVEFRSAEEARQCKEGLQGRLFNNPRIKIMYSNDELPPEQDDTSFYSGMKRSRT 456
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 412
+F+ +S +TE L F +YG V++ D++ + + +V +++ +A+ L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 413 NGELVHGQAIKIEAAKSRKAPSTPTTK 493
N +LV G+ + ++ K+ K + P TK
Sbjct: 83 NAQLVDGRVVILDTTKAAK-HNPPDTK 108
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/71 (19%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 640
++ +FV ++ + + + F ++G V++ D++ + + +V + + A+
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 641 KELNGMMVDGQ 673
ELN +VDG+
Sbjct: 80 LELNAQLVDGR 90
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Frame = +2
Query: 458 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 607
++R+A S P++ +FV +D ++++F +FG V I+ N YG+V
Sbjct: 65 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 124
Query: 608 LDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 715
++ D A++ +NG DG+ + V+ + +R
Sbjct: 125 FNSKEDAQSAVEAMNGKFFDGRFILVKFGQPGLSRR 160
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 412
+F+ SD +E L+ +F ++G V I+ N YG+V +++ + A++ +
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 413 NGELVHGQAIKIE 451
NG+ G+ I ++
Sbjct: 139 NGKFFDGRFILVK 151
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 41.1 bits (92), Expect = 7e-04
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGT--VVECDIVRN--------YGFVHMENEQVGREAIQ 406
I++G+L EA L F +V ++RN YGFV E+ V + ++
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 407 NLNGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNLTDKTRAPEVRELF-QKFG 562
NG + Q ++ A + R + P IFVG+L+ + E F +K+
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 563 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
+V +V + YGFV + A+ E+NG+ + M++ +T R
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 277
Score = 35.5 bits (78), Expect = 0.036
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Frame = +2
Query: 224 ESKMPGTGT-FKIFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHM 373
E ++ G IF+G+LS ++ L F EKY +V +V + YGFV
Sbjct: 187 EKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Query: 374 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRK 469
+E +A+ +NG +A++I A RK
Sbjct: 247 GDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 41.1 bits (92), Expect = 7e-04
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
Frame = +2
Query: 221 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHME 376
S S M G K+F+G +S +TT F K+G VV+ I+ R +GFV
Sbjct: 58 SSSSMSSPG--KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFA 115
Query: 377 NEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPST------PTTKIFVGNLTDKTRAPEV 538
+ V + ++ ++ + + ++ R T T KIFVG L E+
Sbjct: 116 DSAVAEKVLE--EDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDEL 173
Query: 539 RELFQKFGTVVECDIVRNY 595
+ F +G ++E I+ ++
Sbjct: 174 KNYFCVYGDIIEHQIMYDH 192
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +2
Query: 248 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 382
T KIF+G L E +L+ F YG ++E I+ R +GFV + E
Sbjct: 156 TRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 446 IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
++ S + S+P K+FVG ++ +T A F KFG VV+ I+
Sbjct: 53 VDHRHSSSSMSSPG-KLFVGGVSWETTAETFANYFGKFGEVVDSVIM 98
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
KIF+G L+ +T +R FE++G +VE ++ + YGFV + + A QN
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 410 LNGELVHGQAIKIEAAKSRKAPSTPTT 490
+N + +A A + P PT+
Sbjct: 83 MNPVIDGRRANCNLACLGAQKPRPPTS 109
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 634
T TKIFVG L +T+ +R F++FG +VE ++ + YGFV
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMR 78
Query: 635 AIKELNGMMVDGQPMKVQLS 694
A + +N ++DG+ L+
Sbjct: 79 ACQNMN-PVIDGRRANCNLA 97
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Frame = +2
Query: 218 VSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 373
++E M K+F+G + TE L LF ++ V E +I+ R F+
Sbjct: 1 MAEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTC 60
Query: 374 ENEQVGREAIQNL-NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELF 550
+ + I + N + + G + ++ + K+FVG L EV+ LF
Sbjct: 61 PTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLF 120
Query: 551 QKFGTVVECDIVR 589
++GT+ + I+R
Sbjct: 121 SEYGTIKDLQILR 133
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Frame = +2
Query: 494 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 649
+F+ N+ + E+ FQ FG V+ + + +GF+ D+ +AI +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 650 NGMMVDGQPMKVQLSTSRVRQR 715
NG + G+ +KVQL +Q+
Sbjct: 392 NGCQLSGKKLKVQLKRDNGQQQ 413
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYG--FVHMENEQVGREAIQNL 412
K+F+G L +E +++ LF +YGT+ + I+R + G F+ E+++ A++ L
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 413 NG 418
NG
Sbjct: 161 NG 162
Score = 31.5 bits (68), Expect = 0.59
Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Frame = +2
Query: 221 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHME 376
S + G +FI N+ + + +L F+ +G V+ + + +GF+ +
Sbjct: 320 SSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 379
Query: 377 NEQVGREAIQNLNGELVHGQAIKIE 451
++ + AI +NG + G+ +K++
Sbjct: 380 SQAAAQNAINTMNGCQLSGKKLKVQ 404
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 257 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 433
+F+ N +D T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMD 117
Query: 434 QAIKIEAA 457
+ I +E A
Sbjct: 118 KVISVEYA 125
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 634
TP+ KIFVG L+ T ++E F FG +V+ +V R +GFV D+ N+
Sbjct: 34 TPS-KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANN 92
Query: 635 AIKELNGMMVDGQPMKVQLSTS 700
A++ + +DG+ + V + S
Sbjct: 93 AMQAMQNKELDGRIIGVHPADS 114
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQNL 412
K+F+G L +EA+++ LF KYGT+ + I+R F+ E ++ A++++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 413 NGE 421
NG+
Sbjct: 167 NGK 169
Score = 37.1 bits (82), Expect = 0.012
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+G + +E+ L LF+++ V E +I+ R F+ + + + +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 410 L-NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
N + + G ++ + K+FVG L EV+ LF K+GT+ + I+
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQIL 138
Query: 587 R 589
R
Sbjct: 139 R 139
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQNL 412
K+F+G L +EA+++ LF KYGT+ + I+R F+ E ++ A++++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 413 NGE 421
NG+
Sbjct: 167 NGK 169
Score = 37.1 bits (82), Expect = 0.012
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+G + +E+ L LF+++ V E +I+ R F+ + + + +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 410 L-NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
N + + G ++ + K+FVG L EV+ LF K+GT+ + I+
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQIL 138
Query: 587 R 589
R
Sbjct: 139 R 139
Score = 34.7 bits (76), Expect = 0.063
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +2
Query: 494 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 649
+F+ N+ + E+ FQ FG V+ + + +GFV D+ +AI +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 650 NGMMVDGQPMKVQL 691
NG + G+ +KVQL
Sbjct: 411 NGRHLGGKKLKVQL 424
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 412
+FI N+ + + +L F+ +G V+ + + +GFV +++ + AI +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 413 NGELVHGQAIKIE 451
NG + G+ +K++
Sbjct: 411 NGRHLGGKKLKVQ 423
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 634
T TK+FVG L +T E+R F++FG ++E I+ + YGFV +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Query: 635 AIKELNGMMVDGQPMKVQLST 697
A+ + N ++DG+ +++
Sbjct: 74 AVADPN-PVIDGRKANCNIAS 93
Score = 35.1 bits (77), Expect = 0.048
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+G L+ +T ++R FE++G ++E I+ + YGFV A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 410 LNGELVHGQAIKIEAAK-SRKAPSTP 484
N ++ G+ A R PS P
Sbjct: 78 PN-PVIDGRKANCNIASFGRPRPSPP 102
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 634
T TK+FVG L +T E+R F++FG ++E I+ + YGFV +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Query: 635 AIKELNGMMVDGQPMKVQLST 697
A+ + N ++DG+ +++
Sbjct: 74 AVADPN-PVIDGRKANCNIAS 93
Score = 35.1 bits (77), Expect = 0.048
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+G L+ +T ++R FE++G ++E I+ + YGFV A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 410 LNGELVHGQAIKIEAAK-SRKAPSTP 484
N ++ G+ A R PS P
Sbjct: 78 PN-PVIDGRKANCNIASFGRPRPSPP 102
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 38.3 bits (85), Expect = 0.005
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Frame = +2
Query: 233 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 388
+P G+ ++++G + TE DL+ G V E I+R Y FV ++ +
Sbjct: 87 LPPHGS-EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDL 145
Query: 389 GREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 568
EAI LN G+ IK +++ ++F+GN+ ++++ + G
Sbjct: 146 AAEAIDTLNNTDFRGKRIKCSTTQAKH-------RLFLGNVPRNWMESDIKKAANRIGPG 198
Query: 569 VE 574
V+
Sbjct: 199 VQ 200
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 412
++I NL T+ L+ LFE +G +++ I YGFVH A++N
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
Query: 413 NGELVHGQAIKIEAAKSRKAPSTPTTKI 496
+ G + AK + T T +
Sbjct: 330 ERYEIDGHMLDCTLAKPQADQKTNTNTV 357
Score = 29.5 bits (63), Expect = 2.4
Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 25/179 (13%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVEC--------DIVRNYGFVHME--NEQVGREAI 403
++F+GN+ E+D++ + G V+ ++ RN GF +E N +
Sbjct: 173 RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSK 232
Query: 404 QNLNGEL--VHGQAIKIEAAKSRK-----APSTPTTKIFVGNLTDKTRAPEVRELFQKFG 562
Q ++ + A + A+SR + ++ +++ NL ++ LF+ G
Sbjct: 233 QKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHG 292
Query: 563 TVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 715
+++ I YGFVH V A+K +DG + L+ + Q+
Sbjct: 293 KILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQK 351
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 412
+F+GN+ TE LR + + G VV +V + YGF ++E+ A +NL
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 413 NGELVHGQAIKIEAAKSRK 469
++G+ ++++ A++ K
Sbjct: 71 QSYEINGRQLRVDFAENDK 89
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Frame = +2
Query: 236 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 388
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 27 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 86
Query: 389 GREAIQNLNGELVHGQAIKIEAA 457
+ +Q EL +G+ ++++ A
Sbjct: 87 VDKVLQKTFHEL-NGKMVEVKLA 108
Score = 34.3 bits (75), Expect = 0.083
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIK- 643
KIFVG L E ++ F +FG + + ++ R +GF+ D+ V+ ++
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93
Query: 644 ---ELNGMMVD---GQPMKVQLSTSR 703
ELNG MV+ P + L+T R
Sbjct: 94 TFHELNGKMVEVKLAVPKDMALNTMR 119
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 482 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNG 655
P+ ++VGNL E+ + F +FG + R+Y FV+ + D AI+ L G
Sbjct: 21 PSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQG 80
Query: 656 MMVDGQPMKVQLS 694
+ G P++++ +
Sbjct: 81 FPLSGNPLRIEFA 93
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +2
Query: 257 IFIG-NLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELV 427
++IG S K +A LR +F +G + + + R+Y FV N +A ++L G+L
Sbjct: 153 LYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLF 212
Query: 428 HGQAIKIEAAKSRKAPS 478
+ I AKS + S
Sbjct: 213 GNPRVHICFAKSEPSSS 229
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELNG 655
++++VGNL + E+ + F+ FG + + R Y F+ + + D DAI+E++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Frame = +2
Query: 494 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 649
+F+ N+ + E+ FQ FG V+ + + +GF+ D+ +AI +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 650 NGMMVDGQPMKVQLSTSRVRQR 715
NG + G+ +KVQL +Q+
Sbjct: 401 NGCQLSGKKLKVQLKRDNGQQQ 422
Score = 35.9 bits (79), Expect = 0.027
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Frame = +2
Query: 218 VSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 373
++E M K+F+G + TE L LF ++ V E +I+ R F+
Sbjct: 1 MAEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTC 60
Query: 374 ENEQVGREAIQNL-NGELVHGQAI---------KIEAAKSRKAPSTPTTKIFVGNLTDKT 523
+ + I + N + + G + ++E P K+FVG L
Sbjct: 61 PTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNV 120
Query: 524 RAPEVRELFQKFGTVVECDIVR 589
EV+ LF ++GT+ + I+R
Sbjct: 121 SETEVQSLFSEYGTIKDLQILR 142
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYG--FVHMENEQVGREAIQNL 412
K+F+G L +E +++ LF +YGT+ + I+R + G F+ E+++ A++ L
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 413 NG 418
NG
Sbjct: 170 NG 171
Score = 31.5 bits (68), Expect = 0.59
Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Frame = +2
Query: 221 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHME 376
S + G +FI N+ + + +L F+ +G V+ + + +GF+ +
Sbjct: 329 SSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 388
Query: 377 NEQVGREAIQNLNGELVHGQAIKIE 451
++ + AI +NG + G+ +K++
Sbjct: 389 SQAAAQNAINTMNGCQLSGKKLKVQ 413
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 37.5 bits (83), Expect = 0.009
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 33/162 (20%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 409
K+F+G +S +T E LR F YG V + ++R+ +GFV + V +Q
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 410 LNG----------------ELVHGQAIKIEAAKSRKAPS-TPTTKIFVGNLTDKTRAPEV 538
+ + V G+ + ++S + T KIFVG L E
Sbjct: 67 KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEF 126
Query: 539 RELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAI 640
R+ F+ +G V + I+ R +GFV D+ V+ +
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Score = 34.7 bits (76), Expect = 0.063
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +2
Query: 248 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 403
T KIF+G L T+ + R FE YG V + I+ R +GFV ++E +
Sbjct: 109 TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Query: 404 QNLNGELVHGQAIKIEAAKSRKA 472
+L G+ ++++ A + A
Sbjct: 169 HKTFHDL-SGKQVEVKRALPKDA 190
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 634
T TK+FVG L +T E+R F +FG ++E I+ + YGFV +
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATR 73
Query: 635 AIKELNGMMVDGQPMKVQLST 697
A+ + N ++DG+ +++
Sbjct: 74 AVADPN-PVIDGRKANCNIAS 93
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 37.1 bits (82), Expect = 0.012
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Frame = +2
Query: 239 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 391
G TF K+F+G L+ +T LR FE+YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Query: 392 REAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTR 526
R A + ++ G+ A S P P + N+ + R
Sbjct: 79 RRACADPT-PIIDGRRANCNLA-SLGRPRPPLPYAVIPNMPGRLR 121
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
T TK+FVG L +T++ +R+ F+++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVI 56
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = +2
Query: 449 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 604
E+ + + P+T +FV L+ +T + +R F +FG V + +V + +GFV
Sbjct: 43 ESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFV 102
Query: 605 HLDATGDVNDAIKELNGMMVDG 670
D I ++G +DG
Sbjct: 103 RYATLEDSAKGIAGMDGKFLDG 124
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 36.7 bits (81), Expect = 0.016
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Frame = +2
Query: 248 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-----------RNYGFVHMENEQVGR 394
T +++GNLS K E L F ++G + I+ RN GFV N G+
Sbjct: 178 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 237
Query: 395 EAIQNLNGELVHGQAIKIEAAKSRKAPS 478
A + G +V+ +KI K+ PS
Sbjct: 238 AAKDEMQGIIVYEYELKIGWGKAVSLPS 265
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----------RNYGFVHLDATGDVN 631
TT ++VGNL+ K + F +FG + I+ RN GFV D
Sbjct: 178 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 237
Query: 632 DAIKELNGMMVDGQPMKV 685
A E+ G++V +K+
Sbjct: 238 AAKDEMQGIIVYEYELKI 255
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 36.7 bits (81), Expect = 0.016
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = +2
Query: 242 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGRE 397
+G + I NL DLR FE++G + + + RNY GFV + E
Sbjct: 44 SGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAE 103
Query: 398 AIQNLNGELVHGQAIKIE-AAKSRKAPSTPTT 490
A++ +N +++ G+ I I A ++RK P T
Sbjct: 104 AMKRMNHKVIGGREIAIVFAEENRKTPQEMRT 135
Score = 35.5 bits (78), Expect = 0.036
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = +2
Query: 449 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFV 604
E SR S+ + + + NL R ++R+ F++FG + + + RNY GFV
Sbjct: 34 ERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFV 93
Query: 605 HLDATGDVNDAIKELNGMMVDGQPMKV 685
D +A+K +N ++ G+ + +
Sbjct: 94 KYRYAEDAAEAMKRMNHKVIGGREIAI 120
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 36.7 bits (81), Expect = 0.016
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE 646
++F G+L ++ + + F +F T ++R+ YGFV D+ A+KE
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 647 LNGMMVDGQPMKVQLSTSRVR 709
+NG V +P+K++ S+ + R
Sbjct: 198 MNGKYVGNRPIKLRKSSWKER 218
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +2
Query: 251 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 406
+++F G+L ++ + L F ++ T ++R+ YGFV N A++
Sbjct: 137 YRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK 196
Query: 407 NLNGELVHGQAIKI 448
+NG+ V + IK+
Sbjct: 197 EMNGKYVGNRPIKL 210
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 406
IF+ TT+ +L+ FE YG + EC +V + YGFV + + REA++
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.3 bits (80), Expect = 0.021
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTV-VECDIVRNYGFVHMENEQV--GREAIQNLNGELV 427
+F+ N++ +++L LFE+YG + ++ GFV + + R A+++L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 428 HGQAIKIEAAKSRKAPSTPTTK---IFVGNLTDKTRAPEVRELFQKFGTVVECDIV---R 589
+ + I + + PS + V NL ++ +F G + E R
Sbjct: 230 RRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKR 289
Query: 590 NYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 694
++ FV A+K LN + G+ +KV+ S
Sbjct: 290 HHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPS 324
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.3 bits (80), Expect = 0.021
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTV-VECDIVRNYGFVHMENEQV--GREAIQNLNGELV 427
+F+ N++ +++L LFE+YG + ++ GFV + + R A+++L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 428 HGQAIKIEAAKSRKAPSTPTTK---IFVGNLTDKTRAPEVRELFQKFGTVVECDIV---R 589
+ + I + + PS + V NL ++ +F G + E R
Sbjct: 230 RRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKR 289
Query: 590 NYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 694
++ FV A+K LN + G+ +KV+ S
Sbjct: 290 HHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPS 324
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 36.3 bits (80), Expect = 0.021
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 23/172 (13%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 412
++IG+L E L F G +V ++RN YGF+ + +Q
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 413 NGELVHG---QAIKIEAAK---SRKAPSTPTTKIFVGNL----TDKTRAPEVRELFQKF- 559
N + Q ++ A K +P IFVG+L TD R +
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 560 GTVVECDIV----RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
G V D V + YGFV + A+ E+NG+ +PM++ + S+
Sbjct: 184 GAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK 235
Score = 29.5 bits (63), Expect = 2.4
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 29/157 (18%)
Frame = +2
Query: 221 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHM 373
S K + + IF+G+L+ T+ L F Y +V +V + YGFV
Sbjct: 145 SGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
Query: 374 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRK------------APSTPT------TKIF 499
+E A+ +NG + ++I A S+K A T T +F
Sbjct: 205 SDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVF 264
Query: 500 VGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFV 604
VG L ++ +F ++G +V I + GFV
Sbjct: 265 VGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFV 301
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENE 382
+F+G L T+ L+ +F +YG +V I + GFV +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.027
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 412
++IG L + L LF +G +V ++++ YGFV + Q+ A+Q +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 413 NGELVHGQAIKIEAAKSRKAPSTP 484
NG G+ + + A P P
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPPIAP 565
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIK 643
T +++G L + LF FG +V ++++ YGFV N A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 644 ELNGMMVDGQPMKVQLS 694
+NG +G+ + V+++
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.027
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 412
++IG L + L LF +G +V ++++ YGFV + Q+ A+Q +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 413 NGELVHGQAIKIEAAKSRKAPSTP 484
NG G+ + + A P P
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPPIAP 565
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIK 643
T +++G L + LF FG +V ++++ YGFV N A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 644 ELNGMMVDGQPMKVQLS 694
+NG +G+ + V+++
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Frame = +2
Query: 458 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN--------YGFVH 607
++R+A S P++ +FV +D ++++F +FG V I+ N YG+V
Sbjct: 46 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 105
Query: 608 LDATGDVNDAIKELNG 655
++ D A++ +NG
Sbjct: 106 FNSKEDAQSAVEAMNG 121
Score = 34.7 bits (76), Expect = 0.063
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 412
+F+ SD +E L+ +F ++G V I+ N YG+V +++ + A++ +
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 413 NGEL 424
NG++
Sbjct: 120 NGKV 123
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELNG 655
++++VGNL + E+ + F+ FG V + R Y F+ + D DAI+ L+G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Frame = +2
Query: 218 VSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 373
V ES + IF+ L TT +L+ FE YG + EC +V + +GFV
Sbjct: 152 VFESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
Query: 374 ENEQVGREAIQN 409
+ + R A++N
Sbjct: 212 KTRKGARAALKN 223
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.9 bits (79), Expect = 0.027
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +2
Query: 248 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 403
T KIF+G LS TTE + + FE++G + ++ R +GFV ++E E +
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSED-SVEVV 177
Query: 404 QNLNGELVHGQAIKIEAA 457
N + + ++++ A
Sbjct: 178 MQSNFHELSDKRVEVKRA 195
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = +2
Query: 251 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 382
+K+F+G ++ +T+E L+ F +YG V+E + R +GFV N+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND 57
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Frame = +2
Query: 461 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 616
S ++ T KIFVG L+ T E + F++FG + ++ R +GFV D+
Sbjct: 111 SSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS 170
Query: 617 TGDV 628
V
Sbjct: 171 EDSV 174
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 646
TK+++ NL +++ELF + G + + R+ G + GD A+K+
Sbjct: 86 TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKK 145
Query: 647 LNGMMVDGQPMKVQL 691
N + +DG+PMK+++
Sbjct: 146 YNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 646
TK+++ NL +++ELF + G + + R+ G + GD A+K+
Sbjct: 22 TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKK 81
Query: 647 LNGMMVDGQPMKVQL 691
N + +DG+PMK+++
Sbjct: 82 YNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 646
TK+++ NL +++ELF + G + + R+ G + GD A+K+
Sbjct: 88 TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKK 147
Query: 647 LNGMMVDGQPMKVQL 691
N + +DG+PMK+++
Sbjct: 148 YNDVQLDGKPMKIEI 162
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +2
Query: 494 IFVGNLTDKTRAPEVRELFQKFGTVV---ECDIVRNYGFVHLDATGDVNDAIKELNGMMV 664
+ + NL + +R +FQ +G V E R FV D A++ +NG ++
Sbjct: 185 LVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVI 244
Query: 665 DGQPMKVQLS 694
G+PM +Q S
Sbjct: 245 SGKPMVIQFS 254
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 31.1 bits (67), Expect(2) = 0.044
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 257 IFIGNLS-DKTTEADLRPLFEKYGTVVECDIVRN---YGFVHMENEQVGREAIQNLNGEL 424
+ + NL+ D E L LF YG +V ++RN + V M + A+ L G +
Sbjct: 247 VLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAM 306
Query: 425 VHGQAIKIEAAK 460
+ G+ +++ +K
Sbjct: 307 LFGKRLEVNFSK 318
Score = 23.0 bits (47), Expect(2) = 0.044
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +2
Query: 452 AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 598
AAK+ + +PT I + L EV Q+ G VV + G
Sbjct: 343 AAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNG 391
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 35.1 bits (77), Expect = 0.048
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Frame = +2
Query: 218 VSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENE 382
VS ++ + I++GN+ T +++ F+ GTV I+ + GF ++E
Sbjct: 92 VSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV 151
Query: 383 QVGREAIQN---LNGELVHGQAIKIEAAKS 463
+V EA+QN LN +HG+ IK+ A ++
Sbjct: 152 EV--EAVQNSLILNESELHGRQIKVSAKRT 179
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 248 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 424
T +F+ N +T E D+ FE YG V+ + RN+ FV ++ +A+ + +
Sbjct: 68 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 127
Query: 425 VHGQAIKIEAA 457
+ + + +E A
Sbjct: 128 LLDKVVSVEYA 138
Score = 33.9 bits (74), Expect = 0.11
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Frame = +2
Query: 356 YGFVHMENEQVGREAIQNL-NGELVHGQA-IKIEAAKS----------RKAPST--PTTK 493
Y FV+ E+E+ +AI+ N +G+ + +E AK KA S PT
Sbjct: 11 YAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKT 70
Query: 494 IFVGNLTD-KTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDG 670
+FV N +TR ++ F+ +G V+ + RN+ FV D A+ + +
Sbjct: 71 LFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLD 130
Query: 671 QPMKVQLSTSRVRQR 715
+ + V+ + +R
Sbjct: 131 KVVSVEYALREAGER 145
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.063
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTV--------VECDIVRNYGFVHMENEQVGR 394
G K+++GNL +E LR +FE +G V E + +GF+ + +
Sbjct: 261 GPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSK 320
Query: 395 EAIQNLNGEL-VHGQAIKIEA 454
A LNG+L + G+ IK+ +
Sbjct: 321 AAQIALNGKLEIAGRTIKVSS 341
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 34.7 bits (76), Expect = 0.063
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Frame = +2
Query: 239 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 391
G TF K+F+G L+ +T LR F++YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Query: 392 REA 400
R A
Sbjct: 79 RRA 81
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
T TK+FVG L +T++ +R F ++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVI 56
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 34.7 bits (76), Expect = 0.063
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +2
Query: 482 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 637
P ++V L+ + ++ + F K G V + +V R +GF+ + + GD N
Sbjct: 73 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 132
Query: 638 IKELNGMMVDGQPMKVQLSTSR 703
I+ L+ ++ G+ + V+ + R
Sbjct: 133 IRSLDHSVLQGRVITVEKARRR 154
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 34.3 bits (75), Expect = 0.083
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +2
Query: 233 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 388
M T K+F+G L+ +T + LR FE++G +VE ++ + YGFV + +
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 389 GREAIQNLNGELVHGQAIKIEAAK---SRKAPSTP 484
++A + ++ G+ A R PS+P
Sbjct: 61 AQKACVD-PAPVIDGRRANCNLAAFGVQRSKPSSP 94
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 34.3 bits (75), Expect = 0.083
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +2
Query: 233 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 388
M T K+F+G L+ +T + LR FE++G +VE ++ + YGFV + +
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 389 GREAIQNLNGELVHGQAIKIEAAK---SRKAPSTP 484
++A + ++ G+ A R PS+P
Sbjct: 61 AQKACVD-PAPVIDGRRANCNLAAFGVQRSKPSSP 94
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Frame = +2
Query: 485 TTKIFVGNLTDKTRAPEVRELFQKFGTV--VECDIVRN------YGFVHLDATGDVNDAI 640
+T +++GN++ T ++ ELF + G + + + +N + FV + D DA+
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92
Query: 641 KELNGMMVDGQPMKV 685
K ++G ++D +P++V
Sbjct: 93 KYISGTILDDRPIRV 107
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Frame = +2
Query: 443 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYG 598
K + A P +FV L ++ +++ F+ +G + +V + Y
Sbjct: 123 KYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYA 182
Query: 599 FVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 703
F+ T D+ A K+ +G +DG+ + V + R
Sbjct: 183 FIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGR 217
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELN 652
T+++VGNL + E+ + F+ FG + + R Y F+ D D DAI L+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLDATGDVNDAIKELN 652
T+++VGNL + E+ + F+ FG + + R Y F+ D D DAI L+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 410 LNGELVHGQAIKIEAAK---SRKAPSTP 484
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 410 LNGELVHGQAIKIEAAK---SRKAPSTP 484
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 410 LNGELVHGQAIKIEAAK---SRKAPSTP 484
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Frame = +2
Query: 482 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDA 637
P ++V L+ + ++ + F K G V + +V R +GF+ + + GD N
Sbjct: 43 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 102
Query: 638 IKELNGMMVDGQPMKVQ 688
I+ L+ ++ G+ + V+
Sbjct: 103 IRSLDHSVLQGRVITVE 119
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDA 616
KIFVGNL + PE E F++FG + +++ + V +A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNA 207
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 224 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 358
E + P +IF+ + +E+D R FE+YG + + + ++Y
Sbjct: 82 EMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY 126
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
KIF+G L + + DLR F ++G + + I R +GFV V + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVA-DRVAR 299
Query: 410 LNGELVHGQAIKIEAA 457
+ E+ GQ + I++A
Sbjct: 300 RSHEIC-GQEVAIDSA 314
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.5 bits (73), Expect = 0.15
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV---HMENEQVG-RE 397
K+FI L+ TT LR LF YG + E ++ + YGFV H++ + +E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 398 AIQNLNGELVHGQ-AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 574
+ ++G + Q A + KI+V N+ A + F +G V E
Sbjct: 136 PSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEE 195
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.5 bits (73), Expect = 0.15
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV---HMENEQVG-RE 397
K+FI L+ TT LR LF YG + E ++ + YGFV H++ + +E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 398 AIQNLNGELVHGQ-AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 574
+ ++G + Q A + KI+V N+ A + F +G V E
Sbjct: 136 PSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEE 195
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGREAIQNL 412
+ + NL + DLR FE++G V + + R+Y GF+ + EA +
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 413 NGELVHGQAIKIE-AAKSRKAPSTPTTKIFVG---NLTDKTRAP 532
+G L+ G+ + + A ++RK P+ T+ G D+ R+P
Sbjct: 99 DGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNRFQDRRRSP 142
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIK 643
T + V NL R ++R F++FG V + + R+Y GF+ D +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 644 ELNGMMVDGQPMKV 685
+++G ++ G+ + V
Sbjct: 97 QMDGYLLLGRELTV 110
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 415
+F+ NLS +T D+ + G VV ++ N+ FV + ++ ++N N
Sbjct: 129 LFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHEDKPVGCAFVEFLSANEAKKVLENKN 188
Query: 416 GELVHGQAI 442
GE HG I
Sbjct: 189 GEYFHGHKI 197
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
KIF+ L +TT L +FE YG + EC +V + +GFV + + +EA++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 410 LNGELVHG----QAIKIEAAKSRKAPSTP-TTKIFVGNLTD 517
+++ Q + A S K P KI +G++ +
Sbjct: 165 PKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMAN 205
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 409
KIF+ L +TT L +FE YG + EC +V + +GFV + + +EA++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 410 LNGELVHG----QAIKIEAAKSRKAPSTP-TTKIFVGNLTD 517
+++ Q + A S K P KI +G++ +
Sbjct: 165 PKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMAN 205
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.1 bits (72), Expect = 0.19
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Frame = +2
Query: 248 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ----VG 391
T KIF+G L T + R FE YG V + I+ R +GFV ++E V
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168
Query: 392 REAIQNLNGELV 427
+ +LNG+ V
Sbjct: 169 HKTFHDLNGKQV 180
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 646
K+F+G ++ T +RE F FG V++ ++ R +GFV ++ +++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 647 LNGMMVDGQPMKVQLSTSRVRQ 712
+ +D + + V+ + SR Q
Sbjct: 67 KH--HIDNRDVDVKRAMSREEQ 86
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 33.1 bits (72), Expect = 0.19
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGREAIQNL 412
+ + NL + DLR FE++G V + + R+Y GFV + +A ++
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 413 NGELVHGQAIKIE-AAKSRKAPSTPTTK-IFVGNLTDKTRAP 532
+G L+ G+ + + A ++RK P+ + G D+ R P
Sbjct: 98 DGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRDRRRTP 139
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIK 643
T + V NL R ++R+ F++FG V + + R+Y GFV D DA
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 644 ELNGMMVDGQPMKV 685
++G ++ G+ + V
Sbjct: 96 HMDGYLLLGRELTV 109
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +2
Query: 464 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDAT 619
R+ + + ++FV L+ T ++++ F FG +V+ ++ + +GFV
Sbjct: 26 RRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATI 85
Query: 620 GDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 715
D A E+N +DG + V + R +R
Sbjct: 86 EDAEKAKAEMNAKFLDGWVIFVDPARPREPRR 117
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 646
T++ V NL ++RELF + G V I R G + D A+K+
Sbjct: 93 TRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKK 152
Query: 647 LNGMMVDGQPMKVQL 691
N +++DG+PM++++
Sbjct: 153 YNNVLLDGRPMRLEI 167
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKE 646
TK+++ NL +++ELF + G + I R+ G + GD A+K
Sbjct: 108 TKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKR 167
Query: 647 LNGMMVDGQPMKVQL 691
N + +DG+ MK+++
Sbjct: 168 YNNVQLDGKLMKIEI 182
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = +2
Query: 494 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 649
+ V +L+ ++E+F FG V+ +I R +G+V A D A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 650 NGMMVDGQPMK 682
+G +DG+ +K
Sbjct: 160 DGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = +2
Query: 494 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKEL 649
+ V +L+ ++E+F FG V+ +I R +G+V A D A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 650 NGMMVDGQPMK 682
+G +DG+ +K
Sbjct: 160 DGAQIDGKVVK 170
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 251 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENE 382
F ++GNL T E DL+ F ++G V+ ++ ++ F ++ E
Sbjct: 8 FTCYVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLIDYE 51
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 497 FVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 613
+VGNL T +++ F +FG V+ ++ ++ F +D
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLID 49
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 464 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 574
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 464 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 574
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.5 bits (68), Expect = 0.59
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELV- 427
+++G L+ + E D+R F +G + I+ + FV + + +A Q L+ LV
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVI 289
Query: 428 HGQAIKI 448
+GQ +K+
Sbjct: 290 NGQRLKL 296
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVND 634
T TKI+VG L TR + F++FG ++ ++V + YGFV
Sbjct: 10 TTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATR 69
Query: 635 AIKELN 652
A K+ N
Sbjct: 70 ACKDPN 75
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 31.1 bits (67), Expect = 0.78
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Frame = +2
Query: 491 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKE 646
+ FVG L T + F +FG V + I+ + + FV + AI
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 647 LNGMMVDGQPMKVQLSTSRVR 709
+NG +DG+ + Q S R
Sbjct: 105 MNGQELDGRNITAQARGSGTR 125
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 412
++IG + E ++ F ++GTV + RN +GF+ E+ +V A +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 413 NGELVHGQAIKI 448
N L+ +K+
Sbjct: 122 NDYLLMEHMLKV 133
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +2
Query: 440 IKIEAAKSRKAP-STP-----TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 592
+ +E +RKAP +TP T +++G + E+ F +FGTV + RN
Sbjct: 38 LPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARN 94
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Frame = +2
Query: 410 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 589
+ G L+ + + E +K++K K+ + NL + + +++ +F G V + I +
Sbjct: 311 VKGNLIWARQLGGEGSKAQK------WKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPK 364
Query: 590 NY--------GFVHLDATGDVNDAIKELNGMMVDGQPMKV 685
N+ FV D +AIK+ NG M +P+ V
Sbjct: 365 NFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAV 404
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVG--REAIQNLN 415
+F+GN+ T +++ F+ GTV I+ + GF ++E +V +EA+Q LN
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 416 GELVHGQAIKIEAAKSRKAPSTPTTKIFVG 505
+HG+ +K+ +K + P K F G
Sbjct: 153 ESELHGRQLKV----LQKRTNVPGLKQFRG 178
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGEL-V 427
+++G L+ + E D+R F +G + I+ + FV + +A + L+ L V
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVV 289
Query: 428 HGQAIKI 448
+GQ +K+
Sbjct: 290 NGQRLKL 296
>At5g49000.1 68418.m06062 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 372
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 234 ILDSETHTFHEMSQQRLKRWYFSENI 157
ILD +HT+HE R+KR Y + N+
Sbjct: 149 ILDCRSHTWHEAPSMRMKRNYPAANV 174
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 356 YGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDK 520
YGFV + + A++ NGE +H I + AK+ AP P K NL +K
Sbjct: 724 YGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAKT--APYPPRIKY---NLAEK 773
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.9 bits (64), Expect = 1.8
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 20/127 (15%)
Frame = +2
Query: 254 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 403
KIF+ L T L F++YG + +C V + YGF+ ++ R A+
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 404 --QNLNGELVHGQAIKIEAAKSRKA--------PSTPTTKIFVGNLTDKTRAPEVRELFQ 553
+ + + Q I + P KI+V N++ ++ E F
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFS 248
Query: 554 KFGTVVE 574
+FG + E
Sbjct: 249 RFGEIEE 255
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Frame = +2
Query: 245 GTFKIFIGNLSDKTTEADLRPLFE-------KYGTVVECDIVRNYGFVHMENEQVGREAI 403
G +++IGNL+ TTE D+R LF + G E + Y V + + V
Sbjct: 260 GYNRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFK-DSVSVAIA 318
Query: 404 QNLNGELVHGQAIKIEAA-KSRKA 472
L+ +++ G+ +KI A K R A
Sbjct: 319 LKLDQQVICGRPVKICCALKDRPA 342
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGT--VVECD--IVRNYGFVHMENEQVGREAIQNLNGEL 424
+ + +L D + LF +YG V C +RN FV +NE +A + LNG
Sbjct: 30 LLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLR 89
Query: 425 VHGQAIKIEAA 457
G+ ++++ A
Sbjct: 90 FLGKVLQVQRA 100
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +2
Query: 362 FVHMENEQVGREAIQNLNGELVHG-QAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEV 538
F H EN++ RE ++N N + G Q IKI + + + D A V
Sbjct: 335 FKHDENDEECREEVENSNSQGKRGDQCIKISVPTESFTLHHEVDSVSISSSGD-AYASIV 393
Query: 539 RELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKE 646
E + G V + DI+++ + +A+G V++ + +
Sbjct: 394 PECLLESGHVNDIDILQSIETID-EASGKVDEQVDD 428
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +2
Query: 380 EQVGREAIQNLNGELVHGQAIKIEAAKSRKAPS--------TPTTKIFVGNLTDKTRAPE 535
E V + I + G +V G A+ + +K++ + + T TK+ V N+ + E
Sbjct: 307 ELVKQGKILSFKGTVVDGHALILSFSKNKPSGTVGKDLDKDTILTKLHVKNIAFEATMKE 366
Query: 536 VRELFQKFGTV 568
VR+LF FG +
Sbjct: 367 VRQLFTPFGQI 377
>At2g38620.1 68415.m04744 cell divsion control protein, putative
similar to SWISS-PROT:P25859 cell division control
protein 2 homolog B [Arabidopsis thaliana]; contains
protein kinase domain, Pfam:PF00069
Length = 257
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = -2
Query: 667 VDHHTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELLKQLADFGRARL----VR*ITH 500
V QLF V H +H + ++ LD +LK +AD G +R ++ TH
Sbjct: 121 VQRFMFQLFKGVAHCHSHGVLHRDLKPQNLLLDKDKGILK-IADLGLSRAFTVPLKAYTH 179
Query: 499 EYFSGWRRRRLPALGRFYF 443
E + W R LG ++
Sbjct: 180 EIVTLWYRAPEVLLGSTHY 198
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 245 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 355
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 245 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 355
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 245 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 355
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Frame = +2
Query: 209 NVCVSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGF 364
N C ++K+ K+F+G L+ T + + F KYG ++E I+ + YGF
Sbjct: 8 NGCFGDTKLT-----KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62
Query: 365 VHMENEQVGREAIQNLNGELVHGQAIKIEAA----KSRKAPS 478
V ++ + A ++ + +++G+ A + RK+P+
Sbjct: 63 VTFKDAKAATRACED-STPIINGRRANCNLASLGGRLRKSPT 103
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 479 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 586
T TK+FVG L T + + F K+G ++E I+
Sbjct: 14 TKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVII 49
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 488 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-----RNYGFVHLD--ATGDVNDAIKE 646
T +++ NL ++REL+ + G + I R G + D A+++
Sbjct: 107 TTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRK 166
Query: 647 LNGMMVDGQPMKVQL 691
N +++DG+PMK+++
Sbjct: 167 YNNVLLDGRPMKLEI 181
>At4g39550.1 68417.m05592 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 392
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 243 VPGILDSETHTFHEMSQQRLKRWYFSENINE 151
+ +LD ++HT+HE R++R Y + N+ E
Sbjct: 163 IVSVLDCQSHTWHEGPGMRVERRYPAANVVE 193
>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
identical to potassium channel [Arabidopsis thaliana]
gi|1100898|gb|AAA97865; Note: also identical to AKT3
[Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
a truncated version of AKT2, PMID:10852932; member of
the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
channel family, PMID:11500563; identical to cDNA
inward-rectifying K+ channel (AKT3) GI:1172219
Length = 802
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 46 WSLFGVHIFNLCYILLFFVHSNPCKYY 126
+S F + F L + LF VH C YY
Sbjct: 209 YSYFWIRCFRLLSVTLFLVHCAGCSYY 235
>At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing
protein similar to SP|Q9Y4I5 Tesmin
(Metallothionein-like 5, testis-specific) {Homo
sapiens}; contains Pfam profile PF03638:
Tesmin/TSO1-like CXC domain
Length = 408
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 174 TIASDAADSFREMYAFQNLKCRAPVLSKSSSGTFLIKPQKPILDRYSKNTVR 329
+I ++ DSF++ + + C +PV S S T + PQKP L ++ N V+
Sbjct: 17 SIPAEKMDSFQK--SLEPPPC-SPVKSSQQSETEVTPPQKPPLHQFGHNQVQ 65
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 257 IFIGNLSDKTTEADLRPLFEKYGTVVE---CDIVRNYGFVHMENEQVGREAIQNLNG 418
+FI NL +TT L+ LFE+Y E D FV E++ A+Q L G
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 86 YCYSLYIVTHVSIISNFIYPVYSLIFSEKYHRFR 187
+ ++ I+ H N++YPV SLIF + FR
Sbjct: 910 FLFATIILIHCYYYMNYLYPVSSLIFIVNLNIFR 943
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 209 NVCVSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 337
N ++S + G +F+G L TT+A++ + +YG V E
Sbjct: 188 NKSPTQSFVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKE 230
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 239 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 337
G G F +F+G+L TT+A+L KYG V E
Sbjct: 231 GGGAF-LFVGDLHWWTTDAELEAELCKYGAVKE 262
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +2
Query: 473 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDV 628
P+ TKI+V L TR + F++FG +V +V + +GFV
Sbjct: 4 PNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESA 63
Query: 629 NDAIKELNGMMVDGQPMKVQLS 694
A + N +DG+ + +L+
Sbjct: 64 TRACENPN-HTIDGRTVNCKLA 84
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 27.5 bits (58), Expect = 9.6
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +2
Query: 350 RNYGFVHMENEQVG--REAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKT 523
+ YG V M+ ++VG R+ + +V + E+ R +FVGNL K
Sbjct: 131 KKYGSVEMKEKKVGEKRKKADEVADTMVSKEGFDDESKLLRT--------VFVGNLPLKV 182
Query: 524 RAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 652
+ + + F KFG VE +R+ V T +K++N
Sbjct: 183 KKKVILKEFSKFGE-VESVRIRSVPIVDSKRTRKGAIMLKQIN 224
>At5g14690.1 68418.m01721 expressed protein predicted protein,
Arabidopsis thaliana
Length = 217
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 350 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSR 466
RN+G H +N+ V E + + HG +K + + R
Sbjct: 11 RNHGGTHCQNDAVDEENRRRRHNHHTHGDEVKCSSKRCR 49
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.5 bits (58), Expect = 9.6
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Frame = +2
Query: 494 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIKEL 649
+ V N+ R E+RE F++FG V + I R+Y FV D +A + +
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 650 NGMMVDGQPMKVQL-STSRVR 709
N G+ + V + S SR R
Sbjct: 109 NRRSFAGREITVVVASESRKR 129
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 584 VRNYGFVHL---DATGDVNDAIKELNGMMVDGQPMKVQL 691
V + FVH ++ G DA + N +++DGQP+KV L
Sbjct: 75 VEPHAFVHFAVFESAGRAMDAAGQCN-LILDGQPLKVSL 112
>At1g59740.1 68414.m06726 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 591
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 115 CKYYFKFHLSRVLVNILGKIPS 180
C Y F F+ S VLV+++ KI S
Sbjct: 509 CSYSFGFYFSSVLVSVVNKITS 530
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 576 HSTTVPNF*NSSRTSGARVLSVKLPTNILVVGVDG 472
H T+ N +++TSG S+K P+ G++G
Sbjct: 1270 HKVTILNLPETAQTSGLHEASIKAPSVTFGTGIEG 1304
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,498,638
Number of Sequences: 28952
Number of extensions: 290602
Number of successful extensions: 1545
Number of sequences better than 10.0: 211
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -