Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o24
         (159 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   0.48 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   1.9  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    19   4.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    19   4.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        19   4.5  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 0.48
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 129 GFLNTLFVMNTFKLSL 82
           GF N LFV++TF + +
Sbjct: 233 GFQNFLFVLSTFSICI 248


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.2 bits (40), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 46  GKSNVDPGEYDKQ 84
           GKS+ D  EYD+Q
Sbjct: 174 GKSDNDAEEYDEQ 186


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 19.0 bits (37), Expect = 4.5
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 28  GCSQNDGKSNVDPGE 72
           GC   D  SN+  GE
Sbjct: 377 GCHMVDSCSNIQTGE 391


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 19.0 bits (37), Expect = 4.5
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 28  GCSQNDGKSNVDPGE 72
           GC   D  SN+  GE
Sbjct: 384 GCHMVDSCSNIQTGE 398


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 19.0 bits (37), Expect = 4.5
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 28 GCSQNDG 48
          GCS NDG
Sbjct: 28 GCSDNDG 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,296
Number of Sequences: 336
Number of extensions: 478
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 33
effective length of database: 111,497
effective search space used:  2118443
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)