Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o21
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.0  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   4.0  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   4.0  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   9.2  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 306 LLNYPKENSEIISNLARAIDKLPVAPHYLQETLK 407
           + NY  + S +  +LA +   L    H LQ+T K
Sbjct: 208 MANYSTDYSSLTHSLAASNHLLSSGQHLLQDTYK 241


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/69 (18%), Positives = 28/69 (40%)
 Frame = +3

Query: 429 EAAKFEPKYEIEPYYTGEPVPLSNSKYIGSYEPNVFRAYDSNARRSSRSHGALMSPYEAI 608
           + A+ E ++  +  Y   P     +  +   E  +   + +   +  R   A+  PY A+
Sbjct: 82  QLARLEKEF-FKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQRMAIAWPYAAV 140

Query: 609 NSSPSFGES 635
            + P+F  S
Sbjct: 141 YTDPAFAAS 149


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 588 MSPYEAINSSPSFGESFP 641
           ++PY   ++SPS  E+FP
Sbjct: 1   LTPYFTQSTSPSASEAFP 18


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 436 PNLNQNMK*SRITQGNRCR 492
           PNLN  ++ S +T+G R +
Sbjct: 60  PNLNPAVQGSSLTEGKRSK 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,605
Number of Sequences: 336
Number of extensions: 3246
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)