Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o21
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    33   0.28 
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245...    30   1.9  
11_06_0559 + 24972403-24972445,24972590-24972680,24973911-249740...    29   2.6  
03_02_0333 + 7566644-7566995,7567432-7567463,7568301-7568457,756...    29   2.6  
03_01_0512 - 3849275-3849333,3849429-3849531,3849610-3849654,384...    29   2.6  
02_04_0528 - 23693237-23693328,23694057-23694141,23694282-236943...    29   4.5  
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133...    28   7.8  

>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
 Frame = +3

Query: 378  APHYLQETLKHEPKYVLEAAKFEPKYEIEPYYTGEPVPLSNSKYIGSYEPN--VFRAYDS 551
            +P Y+  +L H P   + +A         P Y+  P  LS S     Y P   V+    S
Sbjct: 1631 SPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYS--PTSLSYSPTSPVYSPTSPVYNPTSS 1688

Query: 552  NARRSSRSHGALMSPYEAINSSPSFGESFPSVYGSPSKSLY 674
                +S S+      Y    +SPS+  + PS   SP+   Y
Sbjct: 1689 AYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSY 1729


>02_05_0258 +
           27222058-27223198,27223297-27223460,27224399-27224575,
           27224713-27224761,27224991-27225793
          Length = 777

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 489 PLSNSKYIGSYEPNVFRAYDSNARRSSRSHGALMSPYEA 605
           P S   Y GS+EP  +  Y    RR+ R+     SP  A
Sbjct: 171 PASERVYFGSFEPAQYHPYGGETRRADRAAAPPPSPPRA 209


>11_06_0559 +
           24972403-24972445,24972590-24972680,24973911-24974030,
           24974121-24974237,24974745-24974840,24975317-24975610,
           24977153-24977258,24977365-24977566,24977671-24977792
          Length = 396

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +2

Query: 17  CHRCCHV---FVNFRHFDFSFNFKR 82
           CH+C HV   F NF H++F+   K+
Sbjct: 298 CHQCFHVESYFQNFHHYNFNVKIKK 322


>03_02_0333 +
           7566644-7566995,7567432-7567463,7568301-7568457,
           7568568-7568740,7568872-7568973,7569053-7569199,
           7569274-7570248
          Length = 645

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 166 GQHQSTAQLSRQPSHPRHVK*PQNRQHWI 252
           G  Q+TA L+R  SH  HV    NR+ W+
Sbjct: 60  GLPQATASLARSVSHSSHVNHQANRRCWL 88


>03_01_0512 -
           3849275-3849333,3849429-3849531,3849610-3849654,
           3849876-3849974,3850078-3850146,3850251-3850310,
           3850540-3850633,3850875-3850949,3851101-3851219,
           3851433-3851600,3852743-3852928
          Length = 358

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = +3

Query: 312 NYPKENSEIISNLARAIDKLPVAPHY---LQETLKHE--PKYVLEAAKFEPKYEIEPY 470
           +Y +EN +++  L    D + +A HY   L++ ++H+   +YVLE+   +  ++   Y
Sbjct: 143 DYLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQY 200


>02_04_0528 -
           23693237-23693328,23694057-23694141,23694282-23694327,
           23694444-23694792,23694913-23695192,23695794-23695854,
           23695881-23695933
          Length = 321

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 393 QETLKHEPKYVLEAAKFEPKYEIEPYYTGEPVPLSNSKYIGSYE-PNVFRAYDSNAR 560
           +E L    +Y+L    F PKY+       E + ++   +IGSY+ P +   YD + +
Sbjct: 190 KEFLPQRIRYLLRITTFSPKYD-----KHEDLRIAKCHHIGSYQLPEIATVYDDHLK 241


>01_06_0042 -
           25911662-25911736,25912409-25912607,25913275-25913348,
           25913431-25913580,25913666-25913821,25915378-25915464,
           25915706-25915765,25915878-25916414,25917292-25917585
          Length = 543

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 372 PVAPHYLQETLKHEPKYVLEAAKFEPKYEIEPYYTG 479
           P+A H L+  L  +PK    AA+   K   +PY+TG
Sbjct: 356 PMALHLLERLLAFDPKDRPTAAELCVKALTDPYFTG 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,778,798
Number of Sequences: 37544
Number of extensions: 329919
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)