Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o21
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 31   0.64 
SB_2153| Best HMM Match : Laminin_G_2 (HMM E-Value=0.36)               31   1.1  
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)                30   1.5  
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    30   2.0  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             30   2.0  
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  29   2.6  
SB_2209| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32)                 29   3.4  
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)           28   7.9  

>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 468 YYTGEPVPLSNSKYIGSYEPNVFRAYDSNARRS-SRSHGALMSPYEAINSSPSFGESF-P 641
           Y   E V    S    SY  +  R+Y  +  RS SRSH   +SP  + + S S   SF  
Sbjct: 403 YTDEESVGSDASSRSRSYSRSASRSYSRSPVRSWSRSHSPSLSPQRSRSYSRSRSRSFSK 462

Query: 642 SVYGSPS 662
           S+ GSP+
Sbjct: 463 SISGSPT 469


>SB_2153| Best HMM Match : Laminin_G_2 (HMM E-Value=0.36)
          Length = 369

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 453 YEIEPYYTGEPVPLSNSKYIGSYEPNVFRAYDSNARRSSRSHGALMSPYEAINSSPS 623
           YE+ P    E +P +  +Y            + N  +   +HG+ ++ YEA+NS PS
Sbjct: 18  YEVAPSENRESIPDTIPQYESVNNAPARPPNNGNVTQYDVTHGSSVTQYEAMNSHPS 74


>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
          Length = 556

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 354 RAIDKLPVAPHYLQETLKHEPKYVLEAAKFEPKYEIEPYYTGEPVPLSNSKY 509
           + +D L    HYL  ++++ PK   E AK  PKY      T E  P S   Y
Sbjct: 453 KKLDFLTNIVHYLSNSVRNVPKGKEELAKLIPKYHEIMIKTIEQDPSSEKSY 504


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 447 PKYEIEPYYTGEPVPLSNSKYIGSYEPNVFRAYDSNARRSSRS 575
           P Y+IEP Y G  +P+  + Y+          Y S+A   +R+
Sbjct: 201 PSYDIEPSYNGNSLPMIKNLYVIEIPGTKMSIYHSHALSFTRT 243


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 576  GIEKIVSHLSHTRGKHSAHKNQCTLNWTTAPVPLCNT 466
            G ++ VS + H  G+   H+N C+L++T    P+C T
Sbjct: 5533 GTDEGVSEVLHVAGEKRLHRNTCSLDYT----PVCGT 5565


>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 175 QSTAQLSRQPSHPRHVK*PQNRQHWIRT 258
           +S  QL RQPS P H +    RQH  RT
Sbjct: 275 ESLDQLERQPSSPSHSRSSGGRQHACRT 302


>SB_2209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 357 AIDKLPVAPHYLQETLKHEPKYVLEAAKFEPKY 455
           A D    +P+Y  +   H P Y L+A+   P Y
Sbjct: 203 APDAFAHSPNYAPDAFAHSPNYALDASAHSPNY 235


>SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32)
          Length = 773

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +3

Query: 357 AIDKLPVAPHYLQETLKHEPKYVLEAAKF---EPKYEIEPYYTGEPVPLSNSKYIGSY 521
           A+ +L  A   L + L++EP    E +     EP  E EP Y+ +P  LS  KY+GS+
Sbjct: 340 AVSRLKEANDELVQALRYEPVQEEEKSTEDLQEPPQE-EPTYSRDP--LSQGKYLGSF 394


>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
          Length = 1118

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 528 NVFRAYDSNARRSSRSHGALMSPYEAINSSPSFGESFPSVYGSPSKSL 671
           N   A DS+ + SS   G+ +SP     SSP  G +   V GS S  +
Sbjct: 304 NQTEAADSSTQDSSAVTGSALSPSTGSASSPVAGSTSSPVTGSTSSPI 351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,264,676
Number of Sequences: 59808
Number of extensions: 387215
Number of successful extensions: 1151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)