Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o21
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    30   1.3  
U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical p...    27   9.2  
U20862-1|AAK29863.2|  253|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    27   9.2  
AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/89 (26%), Positives = 36/89 (40%)
 Frame = +3

Query: 342 SNLARAIDKLPVAPHYLQETLKHEPKYVLEAAKFEPKYEIEPYYTGEPVPLSNSKYIGSY 521
           +NL   ++K         E  +  P YVLE     P   I      + V + N  + G +
Sbjct: 33  TNLVFTVEKFDQILKAYSEYKQFMPSYVLE-----PLDNITDEQKTQAVQMVNDYHAGKF 87

Query: 522 EPNVFRAYDSNARRSSRSHGALMSPYEAI 608
           EP   + YD       +S+ AL  PYE +
Sbjct: 88  EP---KNYDEYIAIMKKSYPALAGPYETM 113


>U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical
           protein K06C4.9 protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 15  VVIDVVMSSLIFVISIFHLILNEVNSHVTAPPHYIV 122
           +VID+V+  ++ + +   L LN++  +  APP Y++
Sbjct: 98  IVIDLVVFLILPIFNTIGLKLNQIFENDAAPPEYML 133


>U20862-1|AAK29863.2|  253|Caenorhabditis elegans Hypothetical
           protein W06E11.4 protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 510 IGSYEPNVFRAYDSNARRSSRSHGAL 587
           +G  EP  FRA D   R  ++ HG L
Sbjct: 212 VGLIEPGSFRALDDLVRNETKGHGRL 237


>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 160 HPGQHQSTAQLSRQPSHPRHVK*PQNRQ 243
           HP Q Q   Q  + P  P+H   PQ +Q
Sbjct: 463 HPQQQQQQQQYHQMPPQPQHSPYPQQQQ 490


>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 366 KLPVAPHYLQETLKHE--PKYVLEAAKFEPKYEIEPYYTGEP 485
           K P+AP Y + T  +E  P Y++++     KY I P Y   P
Sbjct: 297 KYPIAPTY-ETTPSYETTPSYLVQSHAASKKYPIAPTYETTP 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,397,944
Number of Sequences: 27780
Number of extensions: 292818
Number of successful extensions: 844
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)