Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o21
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide...    30   1.6  
At3g29385.1 68416.m03692 hypothetical protein                          29   2.1  
At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel...    28   5.0  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    28   5.0  

>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
            identical to RNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|8248473|gb|AAF74208
          Length = 1196

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +3

Query: 441  FEPKYEIEPYYTGEP--VPLSNSKYIGSYEPNVFRAYDSNARRSSR-SHGALMSPYEAIN 611
            F  K ++ P + G+       ++K +G     V   YD +A  SS  S      PY+A+ 
Sbjct: 967  FHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVL 1026

Query: 612  SSPSFGESFPSVYGSPSKSLY 674
              P F +  P  +G   K LY
Sbjct: 1027 EIPGFEDLIPEAWG--HKCLY 1045


>At3g29385.1 68416.m03692 hypothetical protein
          Length = 218

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
 Frame = +3

Query: 300 SNLLNYPKENSEIISNLARAIDKLPVAPHYLQETLKHEPKYVLEAAKFEPKYEIEPYYTG 479
           +N L+   + +E IS   R   +L  + H +Q+ L+  P +V         YEI  YY  
Sbjct: 44  TNTLSEKVDTNEAISPSKR---RLLSSTHLMQQLLQPAPTFVFLGDNAALNYEIVLYYVS 100

Query: 480 EPVPLSNS---KYIGSYEPNVFRAYDSNARRSSRSHGALMSPY 599
             + L+NS   K     + ++ R     A    + H  L++ +
Sbjct: 101 R-INLANSCSLKCRSDLDKSINRQTSKTASNQDQQHSLLVNAF 142


>At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel,
           putative (CNGC15) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 678

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 517 LMSRMFSARMTQMRDDLLDPTGP*CRLTKPLTVVRHLVNLF 639
           ++SR+FS  + +++  +LDP G   R    + ++  LV+LF
Sbjct: 52  VLSRVFSEDLERVKTKILDPRGQTIRRWNKIFLIACLVSLF 92


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 465 PYYTGEPVPL-SNSKYIGSYEPNVFRAYDSNARRSSRSHGALMSPYEAINSSPSFGESFP 641
           P+ T  P    S S   GS    VF A  +++  +S       +P    +SSP+FG S P
Sbjct: 40  PFGTSAPFAAQSGSSIFGSTSTGVFGAPQTSSPFAS-------TPTFGASSSPAFGNSTP 92

Query: 642 SVYGSPSKS 668
           +   SP+ S
Sbjct: 93  AFGASPASS 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,539,747
Number of Sequences: 28952
Number of extensions: 268559
Number of successful extensions: 723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)