Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o20
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180...    36   0.019
02_01_0081 - 562163-564406                                             28   5.0  

>02_05_0213 +
           26815889-26816475,26817718-26817788,26817985-26818073,
           26818910-26818991,26819089-26819204,26819290-26819451,
           26819531-26819680,26819969-26820037,26820375-26820491
          Length = 480

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
 Frame = +1

Query: 325 LEISCHGIVWLAGWLTFIWLFN--SKDLYQLQVNMXXXXXXXXXXXXXXXXFVRRRRPV- 495
           LE++  G +WL   ++ + +    S  +  L V +                 VRR RP  
Sbjct: 53  LEVAGDGRIWLPVPISLLLISTTTSSKVSPLLVGLVAGLVLDILFVGAAKLIVRRPRPAY 112

Query: 496 -PMNKLMEVGPDKFSFPSGHASRAVLISFIL 585
              +  + V  D +SFPSGH+SRA L++  L
Sbjct: 113 NAADMYVAVAADHWSFPSGHSSRAFLVAAFL 143


>02_01_0081 - 562163-564406
          Length = 747

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 334 ISLVIENGSVKTLEQLFLVLCQQMSS*FEHHTAKFFSTWVEFD-AFSLF 191
           ++L++ENG +  L++L + LC+      E H    F+   +FD +FS +
Sbjct: 624 VNLMVENGCLPDLDKLLIALCEN-DKVMEAHKLADFALDRDFDVSFSTY 671


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,416
Number of Sequences: 37544
Number of extensions: 258498
Number of successful extensions: 481
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)