Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o20
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical pr...    36   0.030
AC024793-1|AAF60692.2|  649|Caenorhabditis elegans Atm (ataxia t...    29   3.4  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z70210-1|CAA94149.1|  176|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF440520-1|AAL34108.1|  172|Caenorhabditis elegans SKR-21 protein.     27   7.9  

>U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical
           protein T13C5.6 protein.
          Length = 186

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +1

Query: 472 FVRRRRPVPM-NKLMEVGPDKFSFPSGHASRAVLI 573
           +  R RP+   +KL+E   D +SFPSGH+SRA ++
Sbjct: 85  YFHRERPIKTYSKLLEHTVDIYSFPSGHSSRAAML 119


>AC024793-1|AAF60692.2|  649|Caenorhabditis elegans Atm (ataxia
           telangectasia mutated)family protein 1 protein.
          Length = 649

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 322 IENGSVKTLEQLFLVLCQQMSS*FEHHTAKFFST 221
           ++  S +T  Q+F+ +CQQ S  F H     FST
Sbjct: 430 VQTESTETRRQVFVEICQQYSPVFRHFFYTNFST 463


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 190  ETEKKRQTP----PMLKKILQYDVQITKTFVDRALKITALKSLRNHSQLLEI 333
            +TE+  Q P    PML  +    +Q+  + +   LK   L S+  H Q++E+
Sbjct: 1664 DTEEDAQLPEKNKPMLTYLRSLVLQLVHSPISSVLKCCLLLSVEQHKQMIEV 1715


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 190  ETEKKRQTP----PMLKKILQYDVQITKTFVDRALKITALKSLRNHSQLLEI 333
            +TE+  Q P    PML  +    +Q+  + +   LK   L S+  H Q++E+
Sbjct: 1673 DTEEDAQLPEKNKPMLTYLRSLVLQLVHSPISSVLKCCLLLSVEQHKQMIEV 1724


>Z70210-1|CAA94149.1|  176|Caenorhabditis elegans Hypothetical
           protein K08H2.1 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 582 NERDEHSPACMSGWE*ELIRTNFHELIH 499
           NE  +H+   ++ W+ + IRTN   L+H
Sbjct: 70  NEDQDHAQRILTAWDVQFIRTNSAILLH 97


>AF440520-1|AAL34108.1|  172|Caenorhabditis elegans SKR-21 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 582 NERDEHSPACMSGWE*ELIRTNFHELIH 499
           NE  +H+   ++ W+ + IRTN   L+H
Sbjct: 66  NEDQDHAQRILTAWDVQFIRTNSAILLH 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,429,644
Number of Sequences: 27780
Number of extensions: 264938
Number of successful extensions: 564
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)