Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o19
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55837| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_51942| Best HMM Match : 7tm_1 (HMM E-Value=0.059)                   28   4.4  
SB_32758| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_54464| Best HMM Match : DUF1566 (HMM E-Value=4.5)                   27   7.7  

>SB_55837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 143 WHQSRILQLNNIRTFKNFGHKKEPIPTVTFLWHG 244
           W     ++  +I+ +K FG KK  +P  T  W+G
Sbjct: 279 WKHKHNMKERHIQMYKRFGIKKVDLPDGTVQWYG 312


>SB_51942| Best HMM Match : 7tm_1 (HMM E-Value=0.059)
          Length = 408

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 414 FYPQNFLRYNFFTLDN*IWQVLLY-IQVPE 328
           ++P  F   +FF   N  W VLLY I++PE
Sbjct: 184 YHPIYFPIMDFFIFSNSFWNVLLYTIRIPE 213


>SB_32758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 391 IQFFYIRQLNLASIIVYSGTGIVMFLLV 308
           I+  Y RQ+N+   +VYSG GIV+   V
Sbjct: 14  IRVVYPRQVNVIIGVVYSGQGIVIIRAV 41


>SB_54464| Best HMM Match : DUF1566 (HMM E-Value=4.5)
          Length = 174

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 288 ELDHLYLTRRNMTIPVPEYTIILARFSCLM 377
           ++ HL   +RN+ I  P Y++   R  CL+
Sbjct: 18  DVRHLLFPKRNLRICTPTYSMTSCRVKCLL 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,429,007
Number of Sequences: 59808
Number of extensions: 264486
Number of successful extensions: 438
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)