Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o19
         (468 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule...    27   4.8  
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode...    27   4.8  
At3g02880.1 68416.m00282 leucine-rich repeat transmembrane prote...    27   4.8  

>At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) /
           ovule-specific homeobox protein A20 nearly identical to
           meristem L1 layer homeobox protein A20 (AtML1)
           [Arabidopsis thaliana] GI:1881536, protodermal factor2
           (PDF2) [Arabidopsis thaliana] GI:14276060
          Length = 762

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 198 VIRKSQSLQLLFC-GMDSSPSHSWDCVSIGKELDHLYLTRRNMTIPVPEYTIILA 359
           +++ ++ + + FC G+ +S +H+W  +S     D   +TR++M  P     I+L+
Sbjct: 507 MLKLAERMVMSFCTGVGASTAHAWTTLSTTGSDDVRVMTRKSMDDPGRPPGIVLS 561


>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
           protodermal factor 2 (PDF2) identical to GP|14276060|
           protodermal factor2 (GI:14276060)
          Length = 743

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 198 VIRKSQSLQLLFC-GMDSSPSHSWDCVSIGKELDHLYLTRRNMTIPVPEYTIILA 359
           +++ ++ + + FC G+ +S +H+W  +S     D   +TR++M  P     I+L+
Sbjct: 498 MLKLAERMVMSFCSGVGASTAHAWTTMSTTGSDDVRVMTRKSMDDPGRPPGIVLS 552


>At3g02880.1 68416.m00282 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00069
           Eukaryotic protein kinase domain, PF00560 Leucine Rich
           Repeat (5 copies)
          Length = 627

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 267 DCVSIGKELDHLYLTRRNMTIPVPEYTIILARFS 368
           D V+    L  LYL R  ++ P+PE T+ L +F+
Sbjct: 156 DNVNSATRLVTLYLERNQLSGPIPEITLPLQQFN 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,655,270
Number of Sequences: 28952
Number of extensions: 191312
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)