Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o16
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          181   4e-46
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         30   1.6  
SB_10243| Best HMM Match : Ank (HMM E-Value=0)                         30   1.6  
SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)              29   3.6  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 28   4.8  
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          27   8.3  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  181 bits (440), Expect = 4e-46
 Identities = 84/106 (79%), Positives = 96/106 (90%)
 Frame = +3

Query: 30  RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 209
           RGRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++A
Sbjct: 23  RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLA 82

Query: 210 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 347
           TVKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N  V V  +
Sbjct: 83  TVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 78   LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 170
            L +GA ++CADN G   L  +A QG    +N
Sbjct: 913  LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943


>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
          Length = 475

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 78  LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 170
           L +GA ++CADN G   L  +A QG    +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139


>SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)
          Length = 201

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 403 CGRVLPQTRALSLEYTFKISSC 468
           CGR +P  RA+  +Y  K S C
Sbjct: 139 CGRAIPTLRAMRAQYELKASEC 160


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 362  ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 231
            A  FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 175 SLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRP 32
           SLF++     T  T    AP L    + APT  P   ++ AP  PP P
Sbjct: 67  SLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPP 114


>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 353 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 231
           FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 2   FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42


>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 161 TFDTLDSDHIQILCPCVVGAVDYCSHWETQGDT 63
           T   + + +I   CP VVG V+ CS W     T
Sbjct: 330 TVKDVATKYIYDRCPAVVGVVEACSSWAVLAKT 362


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 71  PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDCG 208
           P   S SS+  R +H+GK S         RSP  T G     HD G
Sbjct: 107 PNPASLSSHSRRERHQGKGSPMSSPAMRPRSPMVTPGSH-SNHDAG 151


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 385 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 245
           AT  V A    + L  T+ PAL++K+IN  +R  N  + L+    +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,127,454
Number of Sequences: 59808
Number of extensions: 407192
Number of successful extensions: 1100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)