Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o14
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34555.1 68417.m04910 40S ribosomal protein S25, putative           93   7e-20
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo...    91   2e-19
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)            91   2e-19
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            85   3e-17
At4g27630.1 68417.m03971 expressed protein                             31   0.44 
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    29   1.8  
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ...    29   1.8  
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri...    28   3.1  
At5g65970.1 68418.m08305 seven transmembrane MLO family protein ...    27   4.1  
At5g16810.1 68418.m01969 expressed protein                             27   5.4  
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim...    27   7.1  
At1g24706.1 68414.m03104 expressed protein                             27   7.1  
At5g64950.1 68418.m08170 mitochondrial transcription termination...    26   9.4  
At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containi...    26   9.4  
At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containi...    26   9.4  
At1g48180.1 68414.m05378 expressed protein ; expression supporte...    26   9.4  

>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
          Length = 108

 Score = 93.1 bits (221), Expect = 7e-20
 Identities = 42/72 (58%), Positives = 55/72 (76%)
 Frame = +2

Query: 146 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 325
           +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLARRA+ EL  KG I+ V  H
Sbjct: 37  VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAH 96

Query: 326 HGQVIYTRATKG 361
             Q IYTRAT G
Sbjct: 97  SSQQIYTRATHG 108


>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
           ribosomal protein S25, Lycopersicon esculentum,
           PIR2:S40089
          Length = 108

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 40/70 (57%), Positives = 55/70 (78%)
 Frame = +2

Query: 146 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 325
           +NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+ EL  KG+I+ V  H
Sbjct: 37  VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96

Query: 326 HGQVIYTRAT 355
             Q IYTRAT
Sbjct: 97  SSQQIYTRAT 106


>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
          Length = 108

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 41/70 (58%), Positives = 55/70 (78%)
 Frame = +2

Query: 146 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 325
           +NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+ EL  KGLI+ V  H
Sbjct: 37  VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96

Query: 326 HGQVIYTRAT 355
             Q IYTRAT
Sbjct: 97  SSQQIYTRAT 106


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 38/70 (54%), Positives = 53/70 (75%)
 Frame = +2

Query: 146 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 325
           +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLAR+A+ +L  KG I+ V  H
Sbjct: 53  VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTH 112

Query: 326 HGQVIYTRAT 355
             Q I TRAT
Sbjct: 113 SSQQINTRAT 122


>At4g27630.1 68417.m03971 expressed protein
          Length = 348

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 339 ITCPWCWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGL 169
           I  P CWTT L  PF L    ++     R   +  T   V+S +   +L  +SY+ L
Sbjct: 4   ILSPTCWTTLLKHPFILKGFFSMPQLVSRIGVIGVTLMAVLSGFGAVNL-PYSYISL 59


>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
            CAF protein [Arabidopsis thaliana] GI:6102610; contains
            Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
            Helicase conserved C-terminal domain, PF03368: Domain of
            unknown function, PF00636: RNase3 domain, PF00035:
            Double-stranded RNA binding motif
          Length = 1676

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -2

Query: 325  VLDYLFDETFFPKFDECSSRQGTSDL*PFRYDSRCD*LVLWDF-LVQFLICGFIKQHLVV 149
            VLDYL    FF  F +    Q T DL     ++     V   F L +FL C  I  H V+
Sbjct: 1310 VLDYLMTSYFFTVFPKLKPGQLT-DLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVI 1368

Query: 148  QLVTNF 131
            +  TNF
Sbjct: 1369 EDYTNF 1374


>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 436

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 210 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 70
           +C   LY+F  + + +   TW F +  +  + +   +A+  P+P  F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390


>At2g17250.1 68415.m01992 expressed protein weak similarity to
           Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
           [Saccharomyces cerevisiae]
          Length = 577

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +2

Query: 149 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 289
           +++ + +KPT +K   E     L++PA +S+R+K++ + A  + + L
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLKFTKAWISFLRL 291


>At5g65970.1 68418.m08305 seven transmembrane MLO family protein /
           MLO-like protein 10 (MLO10) identical to membrane
           protein Mlo10 [Arabidopsis thaliana]
           gi|14091590|gb|AAK53803; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 569

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 333 CPWCWTTCLMRPFSLSSMS-ALLAREPRTFNLSDTTAGVISLYC 205
           C WCWTT L     L+  + A  A   +   LS T    ++L C
Sbjct: 5   CFWCWTTLLFCSQLLTGFARASSAGGAKEKGLSQTPTWAVALVC 48


>At5g16810.1 68418.m01969 expressed protein 
          Length = 418

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 13  FKDAAQEGREGFGQTAS-KNTEEEGRIRWRQSQEEEVVQRK 132
           F+D  ++    + QTAS K T    +  W   ++E++++R+
Sbjct: 181 FRDGGKDSAADYAQTASEKTTRARSQGVWNPYEKEQMIKRR 221


>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 184 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 92
           ++CG + +H V++L   F+ G L  +GF  T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 147  NLSRTFPLDHFFFLALPPPDP 85
            +L ++ P DHF    LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582


>At5g64950.1 68418.m08170 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 391

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 288 SSMSALLAREPRTFNLSD 235
           S +++LL R+PR FNLS+
Sbjct: 196 SQLASLLRRQPRIFNLSE 213


>At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 629

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 99  PPPDPSFFFCVF*GCLAEAFASFLGGIFELERS 1
           PP  PSFF     GC   +FAS  G   E+ R+
Sbjct: 24  PPTVPSFFNLCGSGCWERSFASASGDYREILRN 56


>At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1133

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 99  PPPDPSFFFCVF*GCLAEAFASFLGGIFELERS 1
           PP  PSFF     GC   +FAS  G   E+ R+
Sbjct: 24  PPTVPSFFNLCGSGCWERSFASASGDYREILRN 56


>At1g48180.1 68414.m05378 expressed protein ; expression supported
           by MPSS
          Length = 239

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 243 LSDTTAGVISLYCGTSLYSFSYVGL 169
           L    + +  +YCGTS    SYVGL
Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,200,176
Number of Sequences: 28952
Number of extensions: 192148
Number of successful extensions: 640
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)