Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11o12
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 111 1e-25
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 77 3e-15
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 48 1e-06
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 30 0.22
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 27 1.5
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 26 4.7
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 26 4.7
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 8.2
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 8.2
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 111 bits (266), Expect = 1e-25
Identities = 50/68 (73%), Positives = 55/68 (80%)
Frame = +3
Query: 108 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 287
+NPKPFL L GK VLV+LKWG EYKG L S D YMNLQL N EELVDG TG+LGE+LI
Sbjct: 6 VNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILI 65
Query: 288 RCNNVLYV 311
RCNNVL+V
Sbjct: 66 RCNNVLWV 73
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 76.6 bits (180), Expect = 3e-15
Identities = 37/71 (52%), Positives = 45/71 (63%)
Frame = +3
Query: 111 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 290
+P FLN + GK VL++L G +YKG+L DGYMNL L TEE V+G T G+ IR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 291 CNNVLYVRGAD 323
NNVLYV D
Sbjct: 64 GNNVLYVSALD 74
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 48.0 bits (109), Expect = 1e-06
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 114 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANT-EELVDGTCTGNLGEVLIR 290
P LN+ G+ +LV+LK G + G L + D YMNL L + DG L E IR
Sbjct: 3 PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIR 62
Query: 291 CNNVLYVRGAD 323
NN+ Y+R D
Sbjct: 63 GNNIKYLRIQD 73
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 30.3 bits (65), Expect = 0.22
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 132 SLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 242
SL S+ V K G + G L++ DG+MNL L++ +E
Sbjct: 8 SLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQE 44
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 150 VLVKLKWGHEYKGLLVSTDGYMNLQLANTEELV 248
V VKL+ E G L + D ++N+ L + EE+V
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIV 54
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 400 ITGKREILSKKIEISYYSVSSKITLGIYPEILMIEEKNVNWNYCCIQCLNETTLILFF 573
I GK +IL Y+VS+KI ++L+ + N+N + C ++ + +FF
Sbjct: 102 IPGKDKILMCPPSYGMYTVSAKINDVEVVKVLLEPDFNLNVDAICETLSKDSAIKVFF 159
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 25.8 bits (54), Expect = 4.7
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Frame = +3
Query: 171 GHEYKGLLVSTDGYMNLQLANTEELV----DGTCTG---NLGEVLIRCNNVLYVRGAD 323
G + G+L D MNL L + EE + DG TG LG V++R ++ + D
Sbjct: 43 GRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMD 100
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 8.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 310 TYKTLLHLIKTSPKLPVQVP--STSSSVLASCKFM*PSVDTNKPLY 179
+Y TL+ + SP L V ST+SS+ ++C PSV ++ P Y
Sbjct: 286 SYTTLVSQLPPSPCLTVSSGPLSTASSIPSNCSC--PSVKSSGPSY 329
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.0 bits (52), Expect = 8.2
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +1
Query: 418 ILSKKIEISYYSVSSKITLGIYPEILMI 501
+LSK +++ ++V +++GI+P +L +
Sbjct: 510 LLSKFLDLGVWAVDLALSIGIFPYVLKL 537
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,575
Number of Sequences: 5004
Number of extensions: 35424
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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