BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11o12 (587 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta... 126 8e-30 At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 71 8e-13 At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta... 69 3e-12 At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 39 0.002 At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 35 0.035 At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 34 0.061 At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 30 1.3 At1g35850.1 68414.m04454 pumilio/Puf RNA-binding domain-containi... 30 1.3 >At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, putative / snRNP-F, putative / Sm protein F, putative similar to SWISS-PROT:Q15356 small nuclear ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF) [Mouse] Length = 88 Score = 126 bits (305), Expect = 8e-30 Identities = 55/70 (78%), Positives = 61/70 (87%) Frame = +3 Query: 108 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 287 +NPKPFLN+LTGK+V+VKLKWG EYKG L S D YMNLQL NTEE +DG TGNLGE+LI Sbjct: 6 VNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILI 65 Query: 288 RCNNVLYVRG 317 RCNNVLYVRG Sbjct: 66 RCNNVLYVRG 75 >At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6 snRNA-associated Sm-like protein LSm6 [Mus musculus] Length = 91 Score = 70.5 bits (165), Expect = 8e-13 Identities = 31/66 (46%), Positives = 42/66 (63%) Frame = +3 Query: 114 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 293 P FL S+ GK V+VKL G +Y+G+L DGYMN+ + TEE V+G G+ +R Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74 Query: 294 NNVLYV 311 NNVLY+ Sbjct: 75 NNVLYI 80 >At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6 snRNA-associated Sm-like protein LSm6 [Mus musculus] Length = 91 Score = 68.5 bits (160), Expect = 3e-12 Identities = 31/66 (46%), Positives = 41/66 (62%) Frame = +3 Query: 114 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 293 P FL S+ G+ V+VKL G +Y+G L DGYMN+ + TEE V+G G+ IR Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74 Query: 294 NNVLYV 311 NNVLY+ Sbjct: 75 NNVLYI 80 >At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein LSm4 [Mus musculus] Length = 129 Score = 39.1 bits (87), Expect = 0.002 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = +3 Query: 114 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 290 P L + G +LV+LK G Y G LV+ D +MN+ L DG + E IR Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62 Query: 291 CNNVLYVRGAD 323 N + Y+R D Sbjct: 63 GNTIKYLRVPD 73 >At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative similar to small nuclear ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG) [Homo sapiens] SWISS-PROT:Q15357 Length = 80 Score = 35.1 bits (77), Expect = 0.035 Identities = 22/68 (32%), Positives = 34/68 (50%) Frame = +3 Query: 120 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 299 P L K + +KL G L D +MNL + NT E V+G ++G V+IR N+ Sbjct: 8 PDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNS 66 Query: 300 VLYVRGAD 323 ++ V + Sbjct: 67 IVTVEALE 74 >At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative similar to SWISS-PROT:Q15357 small nuclear ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG) [Homo sapiens] Length = 79 Score = 34.3 bits (75), Expect = 0.061 Identities = 22/68 (32%), Positives = 34/68 (50%) Frame = +3 Query: 120 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 299 P L K + +KL G L D +MNL + NT E V+G ++G V+IR N+ Sbjct: 8 PDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE-VNGDDKTDIGMVVIRGNS 66 Query: 300 VLYVRGAD 323 ++ V + Sbjct: 67 IVTVEALE 74 >At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to U6 snRNA-associated Sm-like protein LSm5 [Homo sapiens] SWISS-PROT:Q9Y4Y9 Length = 88 Score = 29.9 bits (64), Expect = 1.3 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Frame = +3 Query: 114 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE---LVDGTCTGNLGEVL 284 P ++ G + V +K E G+L D Y+N+ L + E +G L ++L Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQIL 69 Query: 285 IRCNNV 302 + NN+ Sbjct: 70 LNGNNI 75 >At1g35850.1 68414.m04454 pumilio/Puf RNA-binding domain-containing protein contains Pfam profile: PF00806: Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain) Length = 304 Score = 29.9 bits (64), Expect = 1.3 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 189 LLVSTDGYMNLQLANTEELVDGTCTGNLGEVL 284 LL+S D Y N + + +L D CTGN+ + L Sbjct: 168 LLLSNDAYGNFVVQHVLKLHDSRCTGNIADKL 199 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,790,160 Number of Sequences: 28952 Number of extensions: 169377 Number of successful extensions: 387 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 380 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 387 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1161268208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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