Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11o11
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 30 0.25
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos... 29 0.76
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.8
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 27 2.3
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi... 26 4.0
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 26 5.3
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 26 5.3
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 7.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 9.3
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy... 25 9.3
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 30.3 bits (65), Expect = 0.25
Identities = 28/89 (31%), Positives = 45/89 (50%)
Frame = +3
Query: 72 SESWPSAGCLSSSFWSWHLRVRAWLSTTTVTMQMRISACSSPVPLSGTSSYSLVRPRAT* 251
S S S+ SSS + + ++ST TVT S+ SS VP S T++ +L +A+
Sbjct: 226 SSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVP-SSTAALALNASKAS- 283
Query: 252 CRLLHTNGSTSSIRWSVLPCSSLAVPLLL 338
HT+ + +I V+ C + AV + L
Sbjct: 284 ---NHTSLNAGAIVGIVIGCVAFAVVMAL 309
>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 122
Score = 28.7 bits (61), Expect = 0.76
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 158 SYNADADIGMLVTGTFVGYLIIFAGAAAGYIMQT---PSHKRIDIFYSLVG 301
SYN + ++ + F+G+L++ G GY + P + + F S VG
Sbjct: 17 SYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVG 67
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 545 SNPNKTALYLYAAFEILF*LCSSILCT*FSL 453
SNPNK ++Y+Y F LCS L SL
Sbjct: 72 SNPNKFSIYIYIYFFFYSFLCSPYLFKYISL 102
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 506 MLHTNTMLSY*DYYGPPNNLNSTAITVTS 592
++HTNT +S P N N+T +++T+
Sbjct: 95 LIHTNTSISKPSQTATPQNTNTTQVSLTN 123
>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 173
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 143 ALHYHSYNADADIGMLVTGTFVGYLII--FAGAAAGYIM 253
A Y S+ A I ML+ +F GY I+ F GA G+ +
Sbjct: 116 AAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFL 154
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 340 VNNNGTASDEQGNTDQRI-EDVDPFV*RSLHYVARGRTSEYDEVPDKGTGDEHA 182
V+ N + D+RI E V P R+ + RT ++DE+P GD +
Sbjct: 302 VDTNNVELTNASSQDRRINEGVRPIFWRTRNESYVSRTDQWDELPHGRWGDSRS 355
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 226 RWCGRGLHNADSFTQTDRHLLFAGRCCLVRR*RC 327
R+ R LH+ F Q RHL+ G+ + R C
Sbjct: 88 RFVTRSLHDVGDFEQCKRHLVENGKLFIQRARAC 121
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 251 MQTPSHKRIDIFYSLVGVALFVASGAII 334
M TP K ++F+S V + +A+GAII
Sbjct: 1612 MDTPRAKFTNVFFSDVLIPALLAAGAII 1639
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 9.3
Identities = 27/95 (28%), Positives = 46/95 (48%)
Frame = +3
Query: 3 SSRLGAFDTSTRLAIIIIKFKFRSESWPSAGCLSSSFWSWHLRVRAWLSTTTVTMQMRIS 182
+S +F T T ++I F + + S +SSF + A LS+++V I+
Sbjct: 193 ASSTSSFSTITNTSMIPSSSSFTTTTG-SPYYNTSSFLPSSVISSASLSSSSVLPTSIIT 251
Query: 183 ACSSPVPLSGTSSYSLVRPRAT*CRLLHTNGSTSS 287
+ S+PV +S +S S +T L T GST++
Sbjct: 252 STSTPVTVSSSSLSSFTPSYST---NLTTTGSTTT 283
>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 311 FVASGAIIIDRFQHYGKSEIKDKNLAKASLAIINGAI 421
FV +G IID + G +IKD S A+I +
Sbjct: 10 FVTTGMFIIDEIEFDGGKKIKDIIGGAGSFALIGARL 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,487
Number of Sequences: 5004
Number of extensions: 52273
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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