Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o11
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)               30   1.4  
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               30   1.4  
SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)                      29   2.4  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         29   3.2  
SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)          29   4.3  
SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)                 29   4.3  
SB_30674| Best HMM Match : K_tetra (HMM E-Value=1.5e-33)               28   5.7  
SB_13978| Best HMM Match : K_tetra (HMM E-Value=1.5e-33)               28   5.7  
SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)           28   5.7  
SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20)          28   7.5  
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)                  28   7.5  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_46774| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-09)           28   7.5  
SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)                    28   7.5  
SB_9481| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_7458| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +3

Query: 282  SSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWPXXXXXXXXXXXXXRNEEAK 461
            S +R  VL C S+ V  LL+ S ++V +     +W R   P             RN++ +
Sbjct: 972  SPLRVLVLSCFSVVVAFLLSPSRVLVLSCFSQASWTRRPSPRGRLHSPIQARPNRNDQER 1031

Query: 462  LRTQNRAAQSE 494
            +    R  Q +
Sbjct: 1032 IYRHARVCQGD 1042


>SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)
          Length = 478

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 223 YDEVPDKGTGDEHADIRICIVTVVVESHARTRKCQLQKLDDRQPADGHDSLLNLNFII 50
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+ ++
Sbjct: 49  YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHML 106


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 223 YDEVPDKGTGDEHADIRICIVTVVVESHARTRKCQLQKLDDRQPADGHDSLLNLNFII 50
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+ ++
Sbjct: 609 YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHML 666


>SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)
          Length = 496

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 24  DTSTRLAIIIIKFKFRSESWPSAGCLSSSFWSWHLRVRAWLSTTTVTMQMRISA 185
           D ST  A+++I     S S  +   LS S W W +    WLS   +  ++ I A
Sbjct: 123 DNST--AVVVINHMGTSHS-TALNALSKSIWLWAIERNLWLSAAHLAGKLNIEA 173


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 245 YIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKSEI 370
           Y     S  +I    + VGV ++   G  ++D  QHY K+E+
Sbjct: 519 YARSVTSTLKISSAETHVGVTVYATQGKNVVDLKQHYNKTEL 560


>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
          Length = 468

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
 Frame = +3

Query: 72  SESWPSAGCLSSSFWSWHLRVR---AWLSTTTVTMQMRISACSSPVPLSGTSSYSLVRPR 242
           S S  S   +SSS  +W + V     W+ T +  +   ++ CSS V    T SYS+    
Sbjct: 128 SSSVTSVVTISSSV-TWVVTVSFSVTWVVTVSFNVTWVVTVCSS-VTWVFTVSYSVT--- 182

Query: 243 AT*CRLLHTNGSTSSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWL 389
                L+ T   +SS+ W V  CSS+   + ++ S  +V   S + TW+
Sbjct: 183 -----LVVT--VSSSVTWVVTVCSSVTWVVTVSSSVTLVVTVSSSVTWV 224



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
 Frame = +3

Query: 72  SESWPSAGCLSSSFWSWHLRVR---AWLSTTTVTMQMRISACSSPVPLSGTSSYSLVRPR 242
           S S  S   +SSS  +W + V     W+ T +  +   ++ CSS V    T SYS+    
Sbjct: 318 SSSVTSVVTVSSSV-TWVVTVSFSVTWVVTVSFNVTWVVTVCSS-VTWVFTVSYSVT--- 372

Query: 243 AT*CRLLHTNGSTSSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWL 389
                L+ T   +SS+ W V  CSS+   + ++ S   V   S + TW+
Sbjct: 373 -----LVVT--VSSSVTWVVTVCSSVTCVVTVSSSVTWVVTVSSSVTWV 414


>SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)
          Length = 435

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +3

Query: 177 ISACSSPVPLSGTSSYSLVRPRAT*CRLLHTNGSTSSIRWSV-LPCSSLAVPLLLTDSNI 353
           +SAC +  PL G SSY     + T C +  T  ST S  +SV L C+ + +P ++  S I
Sbjct: 172 VSACVAIGPLVGWSSYVESSHQLT-CHMDWTRKSTPSFAYSVNLICALIYLPGIICIS-I 229

Query: 354 MVRARSKTRT 383
               R +  T
Sbjct: 230 FAYTRRRINT 239


>SB_30674| Best HMM Match : K_tetra (HMM E-Value=1.5e-33)
          Length = 413

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
 Frame = +2

Query: 95  LSIIKFLELALTCSCVALHYHSYNADADIGMLVTGTFVGYLIIFAGAAAGY---IMQTPS 265
           + I+ F+ +++       +Y  ++A  D G+  +     + +I      GY   +  TP 
Sbjct: 311 MMILFFILISMVMFSGCTYYAEFDAQPD-GVFSSIPDTAWFVIVTLTNVGYGDAVPVTPI 369

Query: 266 HKRIDIFYSLVGVALFVASGAIIIDRFQHYGKSEIKDKN 382
            K +    +LVGV        +I  RF+ +  +E   KN
Sbjct: 370 GKLLGTMCALVGVLAIALPSPVIATRFKQFYDAEKIRKN 408


>SB_13978| Best HMM Match : K_tetra (HMM E-Value=1.5e-33)
          Length = 413

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
 Frame = +2

Query: 95  LSIIKFLELALTCSCVALHYHSYNADADIGMLVTGTFVGYLIIFAGAAAGY---IMQTPS 265
           + I+ F+ +++       +Y  ++A  D G+  +     + +I      GY   +  TP 
Sbjct: 311 MMILFFILISMVMFSGCTYYAEFDAQPD-GVFSSIPDTAWFVIVTLTNVGYGDAVPVTPI 369

Query: 266 HKRIDIFYSLVGVALFVASGAIIIDRFQHYGKSEIKDKN 382
            K +    +LVGV        +I  RF+ +  +E   KN
Sbjct: 370 GKLLGTMCALVGVLAIALPSPVIATRFKQFYDAEKIRKN 408


>SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)
          Length = 317

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +2

Query: 200 TFVGYLIIFAGAAAGYIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKS---EI 370
           TF  +L+   G       +TP  +   IFY+LVG+ L + +   + + + HY K     I
Sbjct: 109 TFATHLLTTIGYG-NLTPKTPGGQLFTIFYALVGIPLTLLTLKSMGNHYNHYIKKLIILI 167

Query: 371 KDKNLAKASLAIINGAILLVD 433
           + + L +  +  + G + L D
Sbjct: 168 ETRCLKRTEVKGLEGKVCLGD 188


>SB_54275| Best HMM Match : Galactosyl_T (HMM E-Value=2.4e-20)
          Length = 767

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 264 HTNGSTSSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWP 404
           H+  +  + +W+ L C S  +  +LT+S + V A   T  WLR + P
Sbjct: 226 HSVKALLAFKWATLSCRSKFILKVLTESFVNVPA---TMEWLRSKKP 269


>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
          Length = 553

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -2

Query: 442 EDSINK*DSAIDDGQRGLSQVLVFDLALTIMLESVNNNGTASDEQGNT----DQRIEDVD 275
           ++SIN  D++I+D    +    ++D   +I   S+N+N  + ++  N+    D  I D D
Sbjct: 415 DNSINDNDNSINDNDNSIYDSSIYDNDNSIYDNSINDNDNSINDNDNSINDNDNSINDND 474


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 245  YIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKSEIKD--KNLAKASLAIIN 412
            Y+  T +   +    + VGV ++   G  IID  Q+Y K+ +    KN+A+ +L + N
Sbjct: 2900 YVRATVNSLNVSSDGTHVGVTVYAKIGERIIDLKQYYDKATLLSAIKNIAQPNLNVRN 2957


>SB_46774| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-09)
          Length = 225

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +2

Query: 254 QTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKS---EIKDKNLAKASLAIINGAIL 424
           +TP  +   IFY+LVG+ L + +   + + + HY K     I+ + L +  +  + G + 
Sbjct: 33  KTPGGQLFTIFYALVGIPLTLLTLKAMGNHYNHYIKKLIILIETRCLKRTEVKGLEGKVC 92

Query: 425 LVD 433
           L D
Sbjct: 93  LGD 95


>SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)
          Length = 842

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 523 CICMQHLKSFSDCAALFCVRSLASSLRED 437
           C C Q +K +SDC  L C       ++ D
Sbjct: 291 CKCFQSVKRYSDCDCLGCENPYGKKMQRD 319


>SB_9481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 21 FDTSTRLAIIIIKFKFRSESWPS 89
          ++T  +  II IK+ FR+ +WP+
Sbjct: 6  YNTRNKTQIIAIKYSFRARTWPT 28


>SB_7458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 21  FDTSTRLAIIIIKFKFRSESWPS 89
           ++T  +  II IK+ FR+ +WP+
Sbjct: 52  YNTRNKTQIIAIKYSFRARTWPT 74


>SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 264 HTNGSTSSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWP 404
           H+  +  + +W+ L C S  +  +LT+S + V A   T  WLR + P
Sbjct: 226 HSVKALLAFKWATLSCRSKFILKVLTESFVNVPA---TMEWLRSKKP 269


>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -3

Query: 420 IAPLMMANEALAKFLSLISLLP*CWNLSIIMAPLA 316
           IAPL  A E+ + ++S ISL    W ++I+MA L+
Sbjct: 164 IAPLRHATESKSSYVSAISL---SWVIAILMASLS 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,580,271
Number of Sequences: 59808
Number of extensions: 415382
Number of successful extensions: 1038
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)