Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o08
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21841| Best HMM Match : WD40 (HMM E-Value=0.00078)                  29   2.6  
SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)                 28   6.0  
SB_59317| Best HMM Match : APT (HMM E-Value=7.8)                       28   8.0  
SB_19229| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_21841| Best HMM Match : WD40 (HMM E-Value=0.00078)
          Length = 360

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 302 ARMKCGNITKKEKRMV-LEVAVLVLIIHKL-VDGFTQWLASLHFLECRNTT 156
           A+++   + K+ KRM+ L   + VL+  +L VDG   WL+  H  E R TT
Sbjct: 8   AQLQLSGVYKQTKRMLYLSYPLTVLLSPRLMVDGPIVWLSFSHRYESRATT 58


>SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
          Length = 885

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 281 ITKKEKRMVLEVAVLVLIIHKLVDGFTQWLASLHFLEC 168
           I KK K+  +E A+       L DG T+W+  +H L C
Sbjct: 382 IAKKHKKSRIEHALRERRSKLLRDGVTRWMQVVHHLAC 419


>SB_59317| Best HMM Match : APT (HMM E-Value=7.8)
          Length = 229

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 187 DASHCVNPSTSLWIINTSTATSKTILFSFFVMFPHFIRAEEEQKSNLIPSVNLLH 351
           D S  +  S    I  + TA     LFS F      +R+E++ K+ L  +  L+H
Sbjct: 174 DTSSKIRKSAPTNIWRSDTALESEYLFSVFTYMTSPVRSEKQNKTKLHFNQRLIH 228


>SB_19229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 439 TSLLIG*FEQNKIRENETIGKWSFGSIKQSSVYSEWRQCCTRPR 570
           TSL+I   + +++ ++E IGK   G +   +    W      PR
Sbjct: 284 TSLIISVLDYDRVGKSEMIGKCVVGELSSGADLRHWADMLASPR 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,174,123
Number of Sequences: 59808
Number of extensions: 412530
Number of successful extensions: 806
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)