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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o07
         (287 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48055-3|CAH04721.1|   35|Caenorhabditis elegans Hypothetical pr...    48   1e-06
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    27   2.9  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   2.9  
Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical pr...    26   3.8  
U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeo...    25   6.6  
U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeo...    25   6.6  
Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U55373-6|AAC25889.1|  250|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...    25   8.7  
AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical ...    25   8.7  
AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical...    25   8.7  

>Z48055-3|CAH04721.1|   35|Caenorhabditis elegans Hypothetical
           protein T07A5.5 protein.
          Length = 35

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 17/31 (54%), Positives = 28/31 (90%)
 Frame = +3

Query: 84  MITDIQLAVFSNILGVSIFLLVILYHYINAN 176
           MI+D+QL + +NILG+++ +LV+L+HY+NAN
Sbjct: 1   MISDVQLGIAANILGIAMLMLVVLFHYLNAN 31


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 33   LIHNFNNLIQFKTSNLKMITDIQLAVFSNILGV 131
            +I + N+ I    S L MI++ + A+FSNI+GV
Sbjct: 2360 VISSLNSTITSDAS-LDMISESEQAIFSNIIGV 2391


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 33   LIHNFNNLIQFKTSNLKMITDIQLAVFSNILGV 131
            +I + N+ I    S L MI++ + A+FSNI+GV
Sbjct: 2360 VISSLNSTITSDAS-LDMISESEQAIFSNIIGV 2391


>Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical
           protein T19C4.4 protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 18  NLNTKLIHNFNNLIQFKTSNLKMITDIQLAVFSNIL 125
           N+NT +     N I F +  L ++    L  FSN++
Sbjct: 241 NMNTSMAVTLANFIPFISDGLSLVQPWLLVTFSNVM 276


>U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform a protein.
          Length = 632

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 168 LCSDTG*LIRIWRLPKCWRKLRAG 97
           LC   G L  + R PK W KL++G
Sbjct: 336 LCRSQGTLSDLLRNPKPWNKLKSG 359


>U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform b protein.
          Length = 641

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 168 LCSDTG*LIRIWRLPKCWRKLRAG 97
           LC   G L  + R PK W KL++G
Sbjct: 345 LCRSQGTLSDLLRNPKPWNKLKSG 368


>Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical
           protein T07D10.1 protein.
          Length = 281

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 84  MITDIQLAVFSNILGVSIFLLVILYHYI 167
           ++  +++  F  ILG  +FLL +L H I
Sbjct: 2   IVASVEVTCFHVILGFLMFLLYLLLHQI 29


>U55373-6|AAC25889.1|  250|Caenorhabditis elegans Hypothetical
           protein F26F12.2 protein.
          Length = 250

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  LNTKLIHNFNNLIQFKTSNL 80
           L  KLI N+NNL + K +NL
Sbjct: 87  LEEKLIQNYNNLARPKLNNL 106


>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 267 FYLHLNIKHIFLLETPMLLQWPRLTYIIWNYSHLCSDTG*LI 142
           F   L +KH  ++ +P+L +      +IWN + + S TG +I
Sbjct: 152 FLSKLAVKHDIVIISPILERDEEKDDVIWNTAVVISHTGRVI 193


>AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical
           protein Y105C5B.8 protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 110 FLQHFGSLHILISYPVSLHKCE*FQ 184
           FL+ FG L  + S P++ + CE F+
Sbjct: 25  FLEIFGVLMCVFSVPLTYYSCECFE 49


>AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical
           protein C17H12.9 protein.
          Length = 459

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 168 LCSDTG*LIRIWRLPKCWRKLRAG 97
           LC   G L  + R PK W KL++G
Sbjct: 254 LCRSQGTLSDLLRNPKPWSKLKSG 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,251,010
Number of Sequences: 27780
Number of extensions: 112356
Number of successful extensions: 241
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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