BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11o07 (287 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z48055-3|CAH04721.1| 35|Caenorhabditis elegans Hypothetical pr... 48 1e-06 U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 27 2.9 U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 2.9 Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical pr... 26 3.8 U28993-8|AAK31496.1| 632|Caenorhabditis elegans C.elegans homeo... 25 6.6 U28993-7|AAL27244.1| 641|Caenorhabditis elegans C.elegans homeo... 25 6.6 Z81588-1|CAB04716.1| 281|Caenorhabditis elegans Hypothetical pr... 25 8.7 U55373-6|AAC25889.1| 250|Caenorhabditis elegans Hypothetical pr... 25 8.7 U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 25 8.7 AL110479-6|CAB54354.2| 447|Caenorhabditis elegans Hypothetical ... 25 8.7 AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical... 25 8.7 >Z48055-3|CAH04721.1| 35|Caenorhabditis elegans Hypothetical protein T07A5.5 protein. Length = 35 Score = 47.6 bits (108), Expect = 1e-06 Identities = 17/31 (54%), Positives = 28/31 (90%) Frame = +3 Query: 84 MITDIQLAVFSNILGVSIFLLVILYHYINAN 176 MI+D+QL + +NILG+++ +LV+L+HY+NAN Sbjct: 1 MISDVQLGIAANILGIAMLMLVVLFHYLNAN 31 >U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned gene nameprotein 308, isoform b protein. Length = 4034 Score = 26.6 bits (56), Expect = 2.9 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +3 Query: 33 LIHNFNNLIQFKTSNLKMITDIQLAVFSNILGV 131 +I + N+ I S L MI++ + A+FSNI+GV Sbjct: 2360 VISSLNSTITSDAS-LDMISESEQAIFSNIIGV 2391 >U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned gene nameprotein 308, isoform c protein. Length = 7548 Score = 26.6 bits (56), Expect = 2.9 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +3 Query: 33 LIHNFNNLIQFKTSNLKMITDIQLAVFSNILGV 131 +I + N+ I S L MI++ + A+FSNI+GV Sbjct: 2360 VISSLNSTITSDAS-LDMISESEQAIFSNIIGV 2391 >Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical protein T19C4.4 protein. Length = 304 Score = 26.2 bits (55), Expect = 3.8 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = +3 Query: 18 NLNTKLIHNFNNLIQFKTSNLKMITDIQLAVFSNIL 125 N+NT + N I F + L ++ L FSN++ Sbjct: 241 NMNTSMAVTLANFIPFISDGLSLVQPWLLVTFSNVM 276 >U28993-8|AAK31496.1| 632|Caenorhabditis elegans C.elegans homeobox protein 38,isoform a protein. Length = 632 Score = 25.4 bits (53), Expect = 6.6 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -3 Query: 168 LCSDTG*LIRIWRLPKCWRKLRAG 97 LC G L + R PK W KL++G Sbjct: 336 LCRSQGTLSDLLRNPKPWNKLKSG 359 >U28993-7|AAL27244.1| 641|Caenorhabditis elegans C.elegans homeobox protein 38,isoform b protein. Length = 641 Score = 25.4 bits (53), Expect = 6.6 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -3 Query: 168 LCSDTG*LIRIWRLPKCWRKLRAG 97 LC G L + R PK W KL++G Sbjct: 345 LCRSQGTLSDLLRNPKPWNKLKSG 368 >Z81588-1|CAB04716.1| 281|Caenorhabditis elegans Hypothetical protein T07D10.1 protein. Length = 281 Score = 25.0 bits (52), Expect = 8.7 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +3 Query: 84 MITDIQLAVFSNILGVSIFLLVILYHYI 167 ++ +++ F ILG +FLL +L H I Sbjct: 2 IVASVEVTCFHVILGFLMFLLYLLLHQI 29 >U55373-6|AAC25889.1| 250|Caenorhabditis elegans Hypothetical protein F26F12.2 protein. Length = 250 Score = 25.0 bits (52), Expect = 8.7 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +3 Query: 21 LNTKLIHNFNNLIQFKTSNL 80 L KLI N+NNL + K +NL Sbjct: 87 LEEKLIQNYNNLARPKLNNL 106 >U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical protein F13H8.7 protein. Length = 387 Score = 25.0 bits (52), Expect = 8.7 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -3 Query: 267 FYLHLNIKHIFLLETPMLLQWPRLTYIIWNYSHLCSDTG*LI 142 F L +KH ++ +P+L + +IWN + + S TG +I Sbjct: 152 FLSKLAVKHDIVIISPILERDEEKDDVIWNTAVVISHTGRVI 193 >AL110479-6|CAB54354.2| 447|Caenorhabditis elegans Hypothetical protein Y105C5B.8 protein. Length = 447 Score = 25.0 bits (52), Expect = 8.7 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +2 Query: 110 FLQHFGSLHILISYPVSLHKCE*FQ 184 FL+ FG L + S P++ + CE F+ Sbjct: 25 FLEIFGVLMCVFSVPLTYYSCECFE 49 >AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical protein C17H12.9 protein. Length = 459 Score = 25.0 bits (52), Expect = 8.7 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -3 Query: 168 LCSDTG*LIRIWRLPKCWRKLRAG 97 LC G L + R PK W KL++G Sbjct: 254 LCRSQGTLSDLLRNPKPWSKLKSG 277 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,251,010 Number of Sequences: 27780 Number of extensions: 112356 Number of successful extensions: 241 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 235 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 241 length of database: 12,740,198 effective HSP length: 70 effective length of database: 10,795,598 effective search space used: 269889950 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -