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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o07
         (287 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02502.1 68418.m00184 expressed protein  8113.                      35   0.008
At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containi...    28   1.2  
At5g07260.1 68418.m00828 homeobox protein-related contains weak ...    26   4.8  
At1g04390.1 68414.m00429 expressed protein                             26   4.8  
At3g12800.1 68416.m01597 short-chain dehydrogenase/reductase (SD...    25   8.4  
At2g21080.1 68415.m02502 expressed protein                             25   8.4  

>At5g02502.1 68418.m00184 expressed protein  8113.
          Length = 35

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 84  MITDIQLAVFSNILGVSIFLLVILYHYINA 173
           M  D  L  F+N LG+ IF++VI YH++ A
Sbjct: 1   MFDDQDLGFFANFLGIFIFIMVIAYHFVVA 30


>At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 565

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 195 SIAAIVKALVSLIKKCALY*DVNKSFTRKK 284
           S+ A+V +L+S+  KC    D  K+F+ ++
Sbjct: 225 SVVAVVSSLISMYSKCGCLGDAAKAFSERE 254


>At5g07260.1 68418.m00828 homeobox protein-related contains weak
           similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
           [Arabidopsis thaliana]
          Length = 541

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 186 IWNYSHLCSDTG*LIRIWRLPKCWRKL 106
           IW+Y     D   LIRI R P  W ++
Sbjct: 404 IWSYLESAKDMKELIRIGRHPNSWNEV 430


>At1g04390.1 68414.m00429 expressed protein
          Length = 849

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 234 LLETPMLLQWPRLTYIIWN 178
           LL + ++L+WP+  Y +WN
Sbjct: 192 LLLSTIMLKWPQSRYSVWN 210


>At3g12800.1 68416.m01597 short-chain dehydrogenase/reductase (SDR)
           family protein contains Pfam profile
           PF00106:oxidoreductase, short chain
           dehydrogenase/reductase family
          Length = 298

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 68  NIQSKNDHRHPARSFLQHFGSLHILIS 148
           +++ + D R    +  QHFG L IL++
Sbjct: 69  DVRKQEDARRVVEATFQHFGKLDILVN 95


>At2g21080.1 68415.m02502 expressed protein
          Length = 414

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +3

Query: 39  HNFNNLIQFKTSNLKMITDIQLAVFSNILGVS--IFL----LVILYHYINANSSK*YRSI 200
           ++FN L+QF  S L +I  + L  F  I  ++  +FL    LV L +    + +  Y + 
Sbjct: 88  NSFNVLVQFPESGLAVIGFLTLICFFRIYSLTKLLFLDDSTLVRLGYSRELDKALRYLAY 147

Query: 201 AAIVKALVSLIKKCALY*DVNKSF 272
             +   LV L+ K   +     SF
Sbjct: 148 ILVPSFLVELVHKSIFFYSAEVSF 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,792,471
Number of Sequences: 28952
Number of extensions: 99870
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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