BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11o07 (287 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g02502.1 68418.m00184 expressed protein 8113. 35 0.008 At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containi... 28 1.2 At5g07260.1 68418.m00828 homeobox protein-related contains weak ... 26 4.8 At1g04390.1 68414.m00429 expressed protein 26 4.8 At3g12800.1 68416.m01597 short-chain dehydrogenase/reductase (SD... 25 8.4 At2g21080.1 68415.m02502 expressed protein 25 8.4 >At5g02502.1 68418.m00184 expressed protein 8113. Length = 35 Score = 35.1 bits (77), Expect = 0.008 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = +3 Query: 84 MITDIQLAVFSNILGVSIFLLVILYHYINA 173 M D L F+N LG+ IF++VI YH++ A Sbjct: 1 MFDDQDLGFFANFLGIFIFIMVIAYHFVVA 30 >At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 565 Score = 27.9 bits (59), Expect = 1.2 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = +3 Query: 195 SIAAIVKALVSLIKKCALY*DVNKSFTRKK 284 S+ A+V +L+S+ KC D K+F+ ++ Sbjct: 225 SVVAVVSSLISMYSKCGCLGDAAKAFSERE 254 >At5g07260.1 68418.m00828 homeobox protein-related contains weak similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6) [Arabidopsis thaliana] Length = 541 Score = 25.8 bits (54), Expect = 4.8 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -3 Query: 186 IWNYSHLCSDTG*LIRIWRLPKCWRKL 106 IW+Y D LIRI R P W ++ Sbjct: 404 IWSYLESAKDMKELIRIGRHPNSWNEV 430 >At1g04390.1 68414.m00429 expressed protein Length = 849 Score = 25.8 bits (54), Expect = 4.8 Identities = 8/19 (42%), Positives = 14/19 (73%) Frame = -3 Query: 234 LLETPMLLQWPRLTYIIWN 178 LL + ++L+WP+ Y +WN Sbjct: 192 LLLSTIMLKWPQSRYSVWN 210 >At3g12800.1 68416.m01597 short-chain dehydrogenase/reductase (SDR) family protein contains Pfam profile PF00106:oxidoreductase, short chain dehydrogenase/reductase family Length = 298 Score = 25.0 bits (52), Expect = 8.4 Identities = 9/27 (33%), Positives = 16/27 (59%) Frame = +2 Query: 68 NIQSKNDHRHPARSFLQHFGSLHILIS 148 +++ + D R + QHFG L IL++ Sbjct: 69 DVRKQEDARRVVEATFQHFGKLDILVN 95 >At2g21080.1 68415.m02502 expressed protein Length = 414 Score = 25.0 bits (52), Expect = 8.4 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Frame = +3 Query: 39 HNFNNLIQFKTSNLKMITDIQLAVFSNILGVS--IFL----LVILYHYINANSSK*YRSI 200 ++FN L+QF S L +I + L F I ++ +FL LV L + + + Y + Sbjct: 88 NSFNVLVQFPESGLAVIGFLTLICFFRIYSLTKLLFLDDSTLVRLGYSRELDKALRYLAY 147 Query: 201 AAIVKALVSLIKKCALY*DVNKSF 272 + LV L+ K + SF Sbjct: 148 ILVPSFLVELVHKSIFFYSAEVSF 171 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,792,471 Number of Sequences: 28952 Number of extensions: 99870 Number of successful extensions: 166 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 166 length of database: 12,070,560 effective HSP length: 69 effective length of database: 10,072,872 effective search space used: 261894672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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