Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11o06
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.001
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.4
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 26 4.5
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 26 5.9
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 567 GDWICKCGLYNFKRRQVCYRRTCN 638
GDW+C+CG NF+RR C R CN
Sbjct: 562 GDWLCECGFTNFRRRSNCLR--CN 583
Score = 35.9 bits (79), Expect = 0.006
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 549 QNNASPGDWICK-CGLYNFKRRQVCYR 626
+N PGDW C CG NF+RR C+R
Sbjct: 339 KNRPRPGDWNCPMCGFSNFQRRTSCFR 365
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Frame = +3
Query: 567 GDWICK---CGLYNFKRRQVCYRRTCNGKRSEGVV 662
GDW C CG +NF + C R C R+ V
Sbjct: 447 GDWKCGSEGCGYHNFAKNVCCLR--CGASRATAAV 479
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -2
Query: 692 YTVTIPITSINYTL-RSFPITSSTVT 618
YT T P+TS NYT+ S P+TS+ VT
Sbjct: 504 YTST-PVTSSNYTISSSTPVTSTPVT 528
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -2
Query: 692 YTVTIPITSINYTL-RSFPITSSTVT 618
YT T P+TS NYT+ S P+TS+ VT
Sbjct: 563 YTST-PVTSSNYTISSSTPVTSTPVT 587
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTV----TDLTSFKVV*TTLADPITR 564
PITS S PITSS+V T +TS VV T + PITR
Sbjct: 551 PITSSTVVNTSTPITSSSVLNSSTPITSSTVVNT--STPITR 590
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTV----TDLTSFKVV*TTLADPIT 567
PITS S PITSSTV T +TS VV T + PIT
Sbjct: 1163 PITSSTVVNSSTPITSSTVVNTSTPITSSTVVNT--STPIT 1201
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTV----TDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV T +TS VV T + PIT
Sbjct: 1331 PITSSSVLNSSTPITSSTVVNSSTPITSSTVVNT--STPIT 1369
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTV----TDLTSFKVV*TTLADPIT 567
PITS S PITSSTV T +TS VV T + PIT
Sbjct: 1343 PITSSTVVNSSTPITSSTVVNTSTPITSSTVVNT--STPIT 1381
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTV----TDLTSFKVV*TTLADPIT 567
PITS S PITSSTV T +TS VV T + PIT
Sbjct: 1475 PITSSTVVNSSTPITSSTVVNTSTPITSSTVVNT--STPIT 1513
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTV----TDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV T +TS VV T + PIT
Sbjct: 2171 PITSSSVLNSSTPITSSTVVNSSTPITSSTVVNT--STPIT 2209
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTV----TDLTSFKVV*TTLADPIT 567
PITS S PITSSTV T +TS VV T + PIT
Sbjct: 2183 PITSSTVVNSSTPITSSTVVNTSTPITSSTVVNT--STPIT 2221
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 467 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 502
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 815 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 850
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 875 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 910
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 1031 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 1066
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 1139 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 1174
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 1403 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 1438
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 1451 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 1486
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTV----TDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV T +TS VV + PIT
Sbjct: 1547 PITSSSVLNSSTPITSSTVVNTSTPITSSSVV--NSSTPIT 1585
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS S PITSSTV + TS + +T+ + T
Sbjct: 1655 PITSSTVVNSSTPITSSTVVN-TSTPITSSTVVNSST 1690
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 1703 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 1738
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 1811 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 1846
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 2003 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 2038
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 2243 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 2278
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS S PITSSTV + TS + +T+ + T
Sbjct: 2267 PITSSTVVNSSTPITSSTVVN-TSTPITSSTVVNSST 2302
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 2483 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 2518
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 2531 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 2566
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTV----TDLTSFKVV*TTLADPIT 567
PITS+ S PITSS+V T +TS VV T + PIT
Sbjct: 2567 PITSLTALNSSTPITSSSVLNSSTPITSSTVVNT--STPIT 2605
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 2579 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 2614
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 2675 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 2710
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 2783 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 2818
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 2903 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 2938
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 2999 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 3034
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTL--ADPIT 567
PITS + S PITSSTV + ++ TTL + PIT
Sbjct: 3131 PITSSSILNSSTPITSSTVVNSSTPITSSTTLNTSTPIT 3169
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPIT 567
PITS + S PITSSTV + TS + +T+ + T
Sbjct: 3263 PITSSSVLNSSTPITSSTVVN-TSTPITSSTVVNSST 3298
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 677 PITSINYTLRSFPITSSTVTDLTSFKVV*TTL--ADPIT 567
PITS S PITSSTV + ++ TTL + PIT
Sbjct: 3275 PITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPIT 3313
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 582 CRSNHPVMRCSAPHPGACPFLFPYQTCPSHDYRIDY*TVSSFCH 451
CR+ H S+ CP ++ Y H RID V FC+
Sbjct: 151 CRTCHTDTHTSS----TCPLIWRYYVEKEHPVRIDVSEVRKFCY 190
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 134 DTREVTRNYVTAGKRYDVLAKSRGALLEVGHQQMGTP 244
D R V+RN++T K+Y AK+ + G+++ G+P
Sbjct: 314 DERRVSRNFITLMKQY---AKTPNPKGDGGYKKAGSP 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,020
Number of Sequences: 5004
Number of extensions: 39130
Number of successful extensions: 337
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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