Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o06
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2299| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.38 
SB_4502| Best HMM Match : SpoIIIAC (HMM E-Value=2.8)                   29   2.7  
SB_31028| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_43660| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_7998| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_2299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +3

Query: 561 SPGDWIC---KCGLYNFKRRQVCYR 626
           S GDW+C   KCG  NF RR  C R
Sbjct: 9   SDGDWVCPDPKCGNMNFARRSSCNR 33


>SB_4502| Best HMM Match : SpoIIIAC (HMM E-Value=2.8)
          Length = 82

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -1

Query: 690 HRYDPHHLHK-LHPPIFSHYKFYGNR 616
           HR+D HHL++  +P I ++Y ++ NR
Sbjct: 48  HRHDYHHLYQYYYPAIATYYNYHHNR 73


>SB_31028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 636 YKFYGNRPDVF*SCIDHTCRSNHPVMRCS 550
           +KF G+ P VF  C    C +N P  RC+
Sbjct: 202 FKFLGDHPFVFIHCHVIVCNANDPNSRCA 230


>SB_43660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 689 TVTIPITSINYTLRSFPITSSTVTDLTSFKVV*TTLADPITR*C 558
           T+T  IT+I  T  +    + T+T  T+   + TT  DP+   C
Sbjct: 31  TITTTITTITITTTTTITITITITITTTITTITTTTGDPLESTC 74


>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1800

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +3

Query: 516 EIEKDKHQDEVQNNASPGDWICKCGLYNFKRRQVCYRRTCNGKRSEGVVYGGD 674
           E E+D+ + + + +++P  W C C  Y  K + + + R+ +  + EG+   G+
Sbjct: 172 EEEEDEQKWQPKKSSAPRSWCCVCQKY--KTKILRHLRSIHDLKGEGLAKKGE 222


>SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 690 HRYDPHHLHKLHPPIFSHYKF 628
           H Y  HH H  HP   SH+ F
Sbjct: 171 HLYHHHHQHHYHPTATSHHLF 191


>SB_7998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +3

Query: 516 EIEKDKHQDEVQNNASPGDWICKCGLYNFKRRQVCYRRTCNGKRSEGVVYGGD 674
           E E+D+ + + + +++P  W C C  Y  K + + + R+ +  + EG+   G+
Sbjct: 13  EEEEDEQKWQPKKSSAPRSWCCVCQKY--KTKILRHLRSIHDLKGEGLAKKGE 63


>SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 851

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 522 EKDKHQDEVQNNASPGDWICKCGLYNFKRRQVCYRRTCNGKRSEGV 659
           E+D+ + + + +++P  W C C  Y  K  Q  + R+ +G R E +
Sbjct: 186 EEDEQKWQPKKSSAPRSWCCVCHKYRTKILQ--HLRSIHGLRGESL 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,017,664
Number of Sequences: 59808
Number of extensions: 327596
Number of successful extensions: 943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)