Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o06
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protei...    38   0.008
At3g15680.1 68416.m01987 zinc finger (Ran-binding) family protei...    36   0.034
At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protei...    36   0.034
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    33   0.18 
At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protei...    32   0.41 
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p...    30   1.7  
At2g26695.1 68415.m03202 zinc finger (Ran-binding) family protei...    29   2.9  
At5g63600.1 68418.m07985 flavonol synthase, putative similar to ...    29   3.9  
At5g28823.1 68418.m03544 hypothetical protein                          29   3.9  
At5g43935.1 68418.m05375 flavonol synthase, putative similar to ...    27   8.9  
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ...    27   8.9  
At1g70650.1 68414.m08145 zinc finger (Ran-binding) family protei...    27   8.9  

>At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protein
           similar to ZIS2 [Homo sapiens] GI:4191329; contains Pfam
           profile PF00641: Zn-finger in Ran binding protein and
           others
          Length = 288

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 522 EKDKHQDEVQNNASPGDWIC-KCGLYNFKRRQVCYRRTCNGKRSEGVVYGGDGDR 683
           EK + +D  ++N    DW C  CG  NF  R VC  R CN  +  G   GG  D+
Sbjct: 185 EKSQKRDSTRDN----DWTCPNCGNVNFSFRTVCNMRKCNTPK-PGSQQGGSSDK 234



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +3

Query: 570 DWIC-KCGLYNFKRRQVCYRRTCNGKR 647
           DWIC  CG  NF  R  C  R C   R
Sbjct: 25  DWICPSCGNVNFSFRTTCNMRNCTQPR 51



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +3

Query: 549 QNNASPGDWIC-KCGLYNFKRRQVCYRRTCN----GKRSEG 656
           + NA  G W C  CG  N+  R  C R+ C     G RS G
Sbjct: 237 KQNAPEGSWKCDNCGNINYPFRSKCNRQNCGADKPGDRSNG 277


>At3g15680.1 68416.m01987 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 164

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 552 NNASPGDWIC---KCGLYNFKRRQVCYRRTCNGKRSEGVVYGGDGDRNG 689
           ++  PGDW C    CG +NF  R  C++  C   + E    GG G   G
Sbjct: 58  SDVRPGDWYCTVGNCGTHNFASRSTCFK--CGTFKDETGAGGGGGGIGG 104



 Score = 32.7 bits (71), Expect = 0.24
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 564 PGDWICK-CGLYNFKRRQVCYRRTCNGKRSEGVVYGG 671
           PGDW C+ C   NF+RR  C R  C   RS     GG
Sbjct: 4   PGDWNCRSCSHLNFQRRDSCQR--CGDSRSGPGGVGG 38


>At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 268

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 534 HQDEVQNNASPGDWICKCGLYNFKRRQVCYRRTCN 638
           +Q  V      GDWIC+CG +N+  R  C  + CN
Sbjct: 118 NQASVHKEWRSGDWICRCGFHNYSSRIQC--KKCN 150


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 549 QNNASPGDWICK-CGLYNFKRRQVCYRRTCNGKRSE 653
           +N   P DWIC  CG  NF RR  C++  CN  +++
Sbjct: 400 RNMIVPTDWICTICGCINFARRTSCFQ--CNEPKTK 433


>At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 170

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +3

Query: 564 PGDWICK---CGLYNFKRRQVCYRRTCNGKRSE 653
           PGDW C    CG +NF  R  C++  C   + E
Sbjct: 61  PGDWYCNLGDCGTHNFANRSSCFK--CGAAKDE 91


>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
           subunit, putative contains 5 WD-40 repeats (PF00400);
           similar to katanin p80 subunit (GI:3005601)
           [Strongylocentrotus purpuratus]
          Length = 1180

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 229 TNGNSAIGRLYGSLGTSALSAGRHPDTDTRMIDGLV 336
           T GNSA+    GSL T A S G+  D  + ++  +V
Sbjct: 354 TGGNSAVAHKSGSLSTPATSTGQAGDNKSLVVHSVV 389


>At2g26695.1 68415.m03202 zinc finger (Ran-binding) family protein
           contains Pfam profile PF00641: Zn-finger in Ran binding
           protein and others
          Length = 137

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +3

Query: 567 GDWICK---CGLYNFKRRQVCYRRTCNGKRSEG 656
           GDW+C    CG++N+  R  C++  C   R  G
Sbjct: 106 GDWVCPRVGCGVHNYASRAECFK--CKTTRDYG 136



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
 Frame = +3

Query: 567 GDWIC---KCGLYNFKRRQVCYR 626
           GDW C    CG +N+  R  CYR
Sbjct: 50  GDWYCGALNCGSHNYASRTSCYR 72


>At5g63600.1 68418.m07985 flavonol synthase, putative similar to
           SP|Q96330; contains Pfam profile PF03171: 2OG-Fe(II)
           oxygenase superfamily
          Length = 325

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 693 LHRYDPHHLHKLHPPIFSHYKFYGNRP 613
           ++ +D H  H+L PP   +YK++   P
Sbjct: 110 INNWDEHLFHRLSPPSIINYKYWPKNP 136


>At5g28823.1 68418.m03544 hypothetical protein
          Length = 568

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 181 RCLGEVERSAARGGTPTNGNSAIGRLYGSLGTSALSAG 294
           +CL +   SA   GTP N NS +     +L T+ +S G
Sbjct: 335 KCLEKTVVSACNNGTPLNENSIVNASTKALDTAIVSNG 372


>At5g43935.1 68418.m05375 flavonol synthase, putative similar to
           flavonol synthase from Arabidopsis thaliana [SP|Q96330],
           Matthiola incana [SP|O04395]; contains Pfam profile
           PF03171 2OG-Fe(II) oxygenase superfamily
          Length = 293

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 693 LHRYDPHHLHKLHPPIFSHYKFYGNRP 613
           L  +D H +H + PP   +Y+++ N P
Sbjct: 99  LKAWDDHLIHNIWPPSSINYRYWPNNP 125


>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 513

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 262 HTGDXXXXXXXXXXXLEQRSSRLRQDIVAFTC-CNVITSNFPSI 134
           HTGD            EQRSS+ R   V+    C V  S FPS+
Sbjct: 394 HTGDTTDQSSPTCPPTEQRSSKTRAASVSSDIFCPVTCSPFPSV 437


>At1g70650.1 68414.m08145 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 466

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +3

Query: 540 DEVQNNASPGDWIC-KCGLYNFKRRQVCYR 626
           DE      PGDW C +C   NF +   C R
Sbjct: 227 DERDPRKRPGDWYCTECKFLNFAKNIRCLR 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,616
Number of Sequences: 28952
Number of extensions: 219859
Number of successful extensions: 543
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)