Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o04
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    26   0.37 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.6  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.6  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.6  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 6   KRAICTVKCWQHCTFSAKLRPDAITTPSHKLSFTRSFVKTDTKSV 140
           K+ I T K    C  +  L    I TPS KLS  RSF+     +V
Sbjct: 8   KKFINTTKLLLWCDQTIGLITFDINTPSFKLSKIRSFLNITASAV 52


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 316 CDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQ 438
           C+  G  ++ + +  DG PI+ N+    +E    +   +YQ
Sbjct: 349 CNFEGNPIKTISWLKDGHPIDHNEAVLRIESVRKEDKGMYQ 389


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  RHYHAIAQAVIYAFVCENRYQISL 142
           RH+  +A    + F+ EN+YQ+ +
Sbjct: 117 RHHEEVADGHQHHFLHENKYQLEV 140


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  RHYHAIAQAVIYAFVCENRYQISL 142
           RH+  +A    + F+ EN+YQ+ +
Sbjct: 117 RHHEEVADGHQHHFLHENKYQLEV 140


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  RHYHAIAQAVIYAFVCENRYQISL 142
           RH+  +A    + F+ EN+YQ+ +
Sbjct: 117 RHHEEVADGHQHHFLHENKYQLEV 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,681
Number of Sequences: 336
Number of extensions: 3532
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)