Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o04
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    91   1e-19
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    32   0.075
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    28   1.6  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   3.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   3.7  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   4.9  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    26   6.5  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   6.5  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   6.5  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   6.5  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   8.6  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   8.6  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 45/82 (54%), Positives = 52/82 (63%)
 Frame = +1

Query: 208 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 387
           K   EHINLKV+GQDN  V FKIKK T   KLM  YC R G SM  +RF  DG+ I  + 
Sbjct: 30  KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQ 89

Query: 388 TPTSLEMEEGDTIEVYQQQTGG 453
           TP  L+ME+GD IE   +Q GG
Sbjct: 90  TPAELDMEDGDQIEAVLEQLGG 111


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 32.3 bits (70), Expect = 0.075
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 292 LRKLMNAYCDRAGLSM-QVVRFRFDGQPINENDTPTSLEMEEGDTIEV 432
           ++ L+  YC    +S  + +R  F+G+ ++ ND   S E+E+ D + V
Sbjct: 356 VKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -2

Query: 701 EVTYSIWYTYNLPYHKLFETHNALRSSAMLLCVTKLLPNTFTDTNDVSLKLT*G*SLRRV 522
           + T +  + Y L   K FET N      M+  V    P T TD   ++ KL  G    RV
Sbjct: 17  KTTLTSLFNYLLQNWKSFETCNTKERELMVQQVDSKKPETPTDLEPLANKLE-GPLSERV 75

Query: 521 HL---IDFDPLEMVN 486
           HL   +D++ L   N
Sbjct: 76  HLNTTLDYEVLRGQN 90


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 676 LIIYLTTSYLRRIMLCVARLCYYVSQNYFL 587
           L+I + T Y RRI+ C A LC  +   Y+L
Sbjct: 39  LLIVVITLY-RRIVECCASLCSLIFSKYYL 67


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 514  LILTHWRWSILKIIKFTLGTLLR 446
            L+  H RWS +++ K+ LGT  +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 706 LXKLPTAFGILIIY-LTTSYLRRIMLCVARLCYYVSQNYFLTLLQIQMMFL 557
           L  L  A GI+II+ L   +LR+  +     C Y+++ +F  L    M ++
Sbjct: 334 LISLAIAGGIVIIFVLIIKFLRQTRIIAKSSCDYITRYWFRVLFNACMRWV 384


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
 Frame = +1

Query: 97  CHLRVRL*KQIPNQFVN-SQFCINS----F*NHINLKM---ADEKKGENEHINLKVLGQD 252
           CH R  L  QI N++   S++  +     F   IN+K    A + K ++ HI +   G+ 
Sbjct: 126 CHTR-ELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL 184

Query: 253 NAIVQFKIKKHTPLRKLMNAYCDR 324
           NA+V+ KI K   ++  +   CD+
Sbjct: 185 NALVREKILKVNSVKHFVLDECDK 208


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 306 HQFPERCVFLYFELYNCV 253
           H+FP  C+F  F  YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 273  FELYNCVILT*YFQINVFVFSLLFI 199
            +E+YN +I + Y  INV  F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 306 HQFPERCVFLYFELYNCV 253
           H+FP  C+F  F  YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 152 SFVLIVSRTTLISKWLMKRREKTNTLI*KY*VKITQLY 265
           +F+   +  +LIS +L+K  EK+N L  K+ V I  LY
Sbjct: 341 TFIFQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLY 378


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 35  AALYLFRQATTGRHYHAIAQAVIYAFVCENRYQISLSIHSFVLIVSRTTLISKWLMKRRE 214
           +A  LF  +  G  +  I     Y F   N +Q +LSI      +++ T I +W MK+  
Sbjct: 172 SAYVLFMFSENG--FKVIPTDRFYRFNQRNNFQ-TLSIDEAEAKMNKKTPIPRWFMKKES 228

Query: 215 KTN 223
           + N
Sbjct: 229 EEN 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,593
Number of Sequences: 5004
Number of extensions: 56853
Number of successful extensions: 135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)