Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n10
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         29   2.9  
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  

>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 521  NYRMGSYLNVELYDLILKAFCNVVDP 598
            N++ GS  N +LYD   K+F +V DP
Sbjct: 1973 NFKFGSSKNAQLYDATCKSFGDVRDP 1998


>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1113

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 443  DGDDSSWDFGVSAGFYLDATNEPWNN--NYRMGSYLNVEL 556
            D D  +W    + G +  AT E  NN  +YR+G  + VEL
Sbjct: 1057 DNDRYNWQRPFTKGKFASATGEKINNPRDYRVGDIIGVEL 1096


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 604 NWYYGTQHGRAWCFSFYSEESW--PVQVSKRFCCY 702
           NWY+ T+    WC    ++ +W  P++     CCY
Sbjct: 525 NWYHPTKTQANWCHPTKTQANWNHPIKTHAN-CCY 558


>SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 32  TIHNSFDRNVDTIVSTREQYIHVVPRTIESLSQ*MPRNTV*KSNMDSLQLESSNKIF 202
           TI NSFD   D   S  E  +H V   ++   + +P   +  +N+ +  L+++  +F
Sbjct: 304 TIQNSFDEKRDADFSALEMNVHAVTGALKKFLKLLPEPLI-PNNLQNNILDATGCVF 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,464,481
Number of Sequences: 59808
Number of extensions: 512063
Number of successful extensions: 1056
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)