Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n10
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768...   171   3e-43
At5g23575.1 68418.m02766 transmembrane protein, putative similar...    29   3.2  
At5g15070.1 68418.m01766 expressed protein                             28   5.5  
At1g48390.1 68414.m05405 syntaxin-related family protein contain...    28   7.3  
At3g20740.1 68416.m02624 fertilization-independent endosperm pro...    27   9.6  
At3g07140.2 68416.m00851 GPI transamidase component Gpi16 subuni...    27   9.6  
At3g07140.1 68416.m00850 GPI transamidase component Gpi16 subuni...    27   9.6  

>At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768
           Esterase D (EC 3.1.1.1) {Homo sapiens}; contains Pfam
           profile: PF00756 putative esterase
          Length = 284

 Score =  171 bits (417), Expect = 3e-43
 Identities = 88/175 (50%), Positives = 111/175 (63%)
 Frame = +2

Query: 188 SNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNFITKS 367
           S K+F GY K Y H S  L C M FSIY PP A     K P+LY+LSGLTC+++NFI KS
Sbjct: 10  STKMFDGYNKRYKHFSETLGCSMTFSIYFPPSASSSH-KSPVLYWLSGLTCTDENFIIKS 68

Query: 368 GFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGSYLN 547
           G QR A+ HG+ +V PDTSPRG+ ++G+  S+DFGV AGFYL+AT E W  N+RM  Y+ 
Sbjct: 69  GAQRAASTHGIALVAPDTSPRGLNVEGEADSYDFGVGAGFYLNATQEKW-KNWRMYDYVV 127

Query: 548 VELYDLILKAFCNVVDPNRXXXXXXXXXXXXALVSTLRNPGQYKSVSAFAAICNP 712
            EL  L+ + F + +D  +            AL   LRN  +YKSVSAFA I NP
Sbjct: 128 KELPKLLSENF-SQLDTTKASISGHSMGGHGALTIYLRNLDKYKSVSAFAPITNP 181


>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 474 TPKSHDESSPSILTPRGEVSGPTTITPCSAAYLWKPDLVM 355
           +PK  DES P +     + S P    P     LWKP++ +
Sbjct: 182 SPKDSDESEPEVEKVGDKKSDPKEEVPVEWISLWKPNVTI 221


>At5g15070.1 68418.m01766 expressed protein
          Length = 1049

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = +2

Query: 158 SNMDSLQLESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLT 337
           S M++ + + +  I  G + V+ H SSEL   M     LPP A   D  LP L  L+   
Sbjct: 590 SEMEAAKAQLNEIITAGSKMVHDHVSSELPW-MTDGAGLPPHA---DEHLPELVKLAKKV 645

Query: 338 CSEQNFITKSGFQRYAAEHGVIVVGP 415
             +   + +   +  A      VV P
Sbjct: 646 TEQVRLLAQDEHENLAEPSAYDVVPP 671


>At1g48390.1 68414.m05405 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At3g54160,
           At1g47920 (syntaxin SYP81), At5g41830, At3g44180,
           At3g58890, At1g56610, At1g48390, At3g59270 [Arabidopsis
           thaliana]
          Length = 413

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 443 DGDDSSWDFGVSAGFYLDATN 505
           DGD   WDF V   +Y D TN
Sbjct: 235 DGDVYGWDFNVPFDYYGDVTN 255


>At3g20740.1 68416.m02624 fertilization-independent endosperm
           protein (FIE) contains 6 WD-40 repeats (PF00400);
           identical to fertilization-independent endosperm protein
           (GI:4567095) [Arabidopsis thaliana]
          Length = 369

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 477 LTPKSHDESSPSILTPRGEVSGPTTITPCSAAYLWKPDLVMK 352
           +T  SH++S   I      V G T +  C    +W+ D++ K
Sbjct: 328 ITKLSHNQSKSVIRQTAMSVDGSTILACCEDGTIWRWDVITK 369


>At3g07140.2 68416.m00851 GPI transamidase component Gpi16 subunit
           family protein similar to phosphatidyl inositol glycan
           class T (GI:14456615) [Homo sapiens]; contains Pfam
           profile PF04113: Gpi16 subunit, GPI transamidase
           component
          Length = 643

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/91 (23%), Positives = 45/91 (49%)
 Frame = +2

Query: 95  HVVPRTIESLSQ*MPRNTV*KSNMDSLQLESSNKIFGGYQKVYSHASSELKCKMNFSIYL 274
           H+ P+ I  L Q   +  V +  +   Q   +++ +GG+  + S  +  +  ++ ++++ 
Sbjct: 66  HLFPKAISQLVQ---KFRVKEMELSFTQGRWNHEHWGGFDPLSSMNAKPVGVEL-WAVFD 121

Query: 275 PPQAEGGDVKLPLLYYLSGLTCSEQNFITKS 367
            PQ++       L + LSGL C+  NF+  S
Sbjct: 122 VPQSQVDTSWKNLTHALSGLFCASINFLESS 152


>At3g07140.1 68416.m00850 GPI transamidase component Gpi16 subunit
           family protein similar to phosphatidyl inositol glycan
           class T (GI:14456615) [Homo sapiens]; contains Pfam
           profile PF04113: Gpi16 subunit, GPI transamidase
           component
          Length = 644

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/91 (23%), Positives = 45/91 (49%)
 Frame = +2

Query: 95  HVVPRTIESLSQ*MPRNTV*KSNMDSLQLESSNKIFGGYQKVYSHASSELKCKMNFSIYL 274
           H+ P+ I  L Q   +  V +  +   Q   +++ +GG+  + S  +  +  ++ ++++ 
Sbjct: 66  HLFPKAISQLVQ---KFRVKEMELSFTQGRWNHEHWGGFDPLSSMNAKPVGVEL-WAVFD 121

Query: 275 PPQAEGGDVKLPLLYYLSGLTCSEQNFITKS 367
            PQ++       L + LSGL C+  NF+  S
Sbjct: 122 VPQSQVDTSWKNLTHALSGLFCASINFLESS 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,441
Number of Sequences: 28952
Number of extensions: 355408
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)