Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n06
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 84 2e-17
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 60 3e-10
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 47 3e-06
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 38 0.001
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 27 2.0
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 27 2.0
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 27 2.0
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 8.1
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 84.2 bits (199), Expect = 2e-17
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 18/184 (9%)
Frame = +3
Query: 213 KMFCWGNATHHEL---CIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHL 383
K++ WGN +L ++ ++ L +P K +I +V AG +HS + N G +
Sbjct: 246 KVYTWGNGQQFQLGRRMLERRRLQGLTPQPLALK-----NIISVGAGSYHSFAIDNKGRV 300
Query: 384 YSCGNNDVGQLGRQTESDNG----KNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSW 551
Y+ G N Q G + E + P LV+ + + +I G H+LA+ E G+ +W
Sbjct: 301 YAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLALLEDGRVLAW 360
Query: 552 GSDSMGQLGNNLGAHAQDKPKFVKG----LATK-------NVIQVACGAYHSVALTNSGD 698
G D QLG A + K KG L+T NVIQV CG +H++A+T+ G
Sbjct: 361 GRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIPGLTNVIQVVCGTHHNLAVTSDGK 420
Query: 699 LYSW 710
+YSW
Sbjct: 421 VYSW 424
Score = 61.7 bits (143), Expect = 1e-10
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 17/182 (9%)
Frame = +3
Query: 216 MFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAV--AAGEFHSLYLSNSGHLYS 389
++ +G+ + +EL + G + D+V +P L+ +D + V A G HS LS+ G +Y+
Sbjct: 73 VYVFGSGSMNELGM-GEEEMDVVYRPRLNPILSTDKVGVVDLAVGGMHSAALSHDGRVYT 131
Query: 390 CGNNDVGQLGRQTESDNGKN------------PALVE-TFKDCTISTIACGLQHSLAIDE 530
G ND LGR T+ +N P+ VE ++ + C + AI +
Sbjct: 132 WGVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEGALSHLRVTKVICSDNLTAAITD 191
Query: 531 WGQPFSWGS--DSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLY 704
G F+WG+ S G LG + +Q + + + Q+A G H +ALT +G +Y
Sbjct: 192 NGCCFTWGTFRCSDGVLGY---SDSQKRTAEPTQMRLPEICQLATGTDHIIALTTTGKVY 248
Query: 705 SW 710
+W
Sbjct: 249 TW 250
Score = 60.9 bits (141), Expect = 2e-10
Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 4/168 (2%)
Frame = +3
Query: 219 FCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGN 398
F WG + + S +PT + E I +A G H + L+ +G +Y+ GN
Sbjct: 196 FTWGTFRCSDGVLGYSDSQKRTAEPTQMRLPE---ICQLATGTDHIIALTTTGKVYTWGN 252
Query: 399 NDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLG 578
QLGR+ + I ++ G HS AID G+ ++WG + Q G
Sbjct: 253 GQQFQLGRRMLERRRLQGLTPQPLALKNIISVGAGSYHSFAIDNKGRVYAWGLNITRQCG 312
Query: 579 NNLGAHAQ----DKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
+ + KP V L NV + G +H++AL G + +W
Sbjct: 313 IEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLALLEDGRVLAW 360
Score = 56.4 bits (130), Expect = 4e-09
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Frame = +3
Query: 198 LQNYKKMFCWG-NATHH-ELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSN 371
+ N +++ WG N T + ++ + ++ KPTL E +++++ GE H+L L
Sbjct: 294 IDNKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLALLE 353
Query: 372 SGHLYSCGNNDVGQLG--------RQTESDNGKN-----PALVETFKDCTISTIACGLQH 512
G + + G +D QLG + + G N P ++ + + + CG H
Sbjct: 354 DGRVLAWGRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIPGLTN--VIQVVCGTHH 411
Query: 513 SLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 665
+LA+ G+ +SWGS ++G P V+ A K V GA
Sbjct: 412 NLAVTSDGKVYSWGSAENYEVGQGDNDEDVAVPTLVRSKAIKEVAIRVAGA 462
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 60.1 bits (139), Expect = 3e-10
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Frame = +3
Query: 291 PTLSKWKESDHIQAVAAGEFHSLYLSN--SGHLYSCGNNDVGQLGRQTESDNGKNPALVE 464
PT + D I V A +FHS+ L++ S ++Y CG G++G T+ P
Sbjct: 186 PTSGQLFSRDKILDVQASKFHSVVLTDEPSQNVYVCGIGAGGRIGFNTDVQYNFIPIPGI 245
Query: 465 TFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQD-----KPKFVKGL 629
K + I+ HSLA+ ++G +SWG + G+LG + +D P+ +
Sbjct: 246 IHK---VIQISVSHTHSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQITPRRISAF 302
Query: 630 ATKNVIQVACGAYHSVALTNSGDLYSW 710
+I +A G +SVA T++ D+YSW
Sbjct: 303 KDYQIIGMAAGKSYSVAWTDT-DIYSW 328
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 46.8 bits (106), Expect = 3e-06
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Frame = +3
Query: 324 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESD--NGKNPALVETFKDCTIST-- 491
I+ ++ G H+L L L++CG+N GQ G + + N +P + F +
Sbjct: 33 IEKISCGGNHTLLLDEDSQLWACGDNRKGQCGYEVKEPLYNPLSPDYLRIFTRVSHERWV 92
Query: 492 -IACGLQHSLAID-EWGQPFSWGSDSMGQLGNNLGAHAQDKPKF-VKGLATKN-VIQVAC 659
+ CG + S+ + + + S G G+LG +++Q + + L K +I ++
Sbjct: 93 FLTCGWEFSVIVHADRRRVCSCGEGLSGELGQGNRSNSQGLREIDIPYLDDKEFIIDISA 152
Query: 660 GAYHSVALTNSGDLY 704
G H + +TN G+LY
Sbjct: 153 GLRHWICVTNEGNLY 167
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/83 (27%), Positives = 36/83 (43%)
Frame = +3
Query: 312 ESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTIST 491
+ + I ++AG H + ++N G+LY CG+ GQLG K L
Sbjct: 143 DKEFIIDISAGLRHWICVTNEGNLYGCGDGRKGQLGPVVMKTVNKVSFLGRIEH---AQA 199
Query: 492 IACGLQHSLAIDEWGQPFSWGSD 560
+ CG+Q S + E G G +
Sbjct: 200 VVCGVQFSAVLQETGHVIVLGGE 222
Score = 36.3 bits (80), Expect = 0.004
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +3
Query: 381 LYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSD 560
L S G+N QLG + D +P +V D I I+CG H+L +DE Q ++ G +
Sbjct: 2 LLSLGSNGNFQLGLNNDEDV-YSPQIVPF--DRAIEKISCGGNHTLLLDEDSQLWACGDN 58
Query: 561 SMGQLG 578
GQ G
Sbjct: 59 RKGQCG 64
Score = 33.9 bits (74), Expect = 0.023
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = +3
Query: 345 EFHSLYLSNSGHLYSCGNNDVGQLGRQTESDN-GKNPALVETFKDCT-ISTIACGLQHSL 518
EF + ++ + SCG G+LG+ S++ G + D I I+ GL+H +
Sbjct: 99 EFSVIVHADRRRVCSCGEGLSGELGQGNRSNSQGLREIDIPYLDDKEFIIDISAGLRHWI 158
Query: 519 AIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSG 695
+ G + G GQLG + +K F+ + ++ V CG S L +G
Sbjct: 159 CVTNEGNLYGCGDGRKGQLG-PVVMKTVNKVSFLGRI--EHAQAVVCGVQFSAVLQETG 214
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 534 GQPFSWGSDSMGQLGN--NLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLY 704
G +SWG LG N + +D+P + G ++ IQV G Y L +G+LY
Sbjct: 78 GYAYSWGQQIRNYLGRVVNTNQYPRDRPGALTGKDVRSTIQVQVGGYGMYLLNENGNLY 136
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 573 LGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
+G+ D P L + + Q+A G +H + LT+ ++SW
Sbjct: 316 MGHANTKQVDDDPVIHDFLQNRGIKQLAHGDHHHLYLTSDHSIWSW 361
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 309 KESDHIQAVAAGEFHSLYLSNSGHL-YSCGNND 404
KE HI V G S + +GHL Y CG D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGID 35
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 309 KESDHIQAVAAGEFHSLYLSNSGHL-YSCGNND 404
KE HI V G S + +GHL Y CG D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGID 35
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 309 KESDHIQAVAAGEFHSLYLSNSGHL-YSCGNND 404
KE HI V G S + +GHL Y CG D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGID 35
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 22 ERLFSIFKNVFLLPFAISKMKF*V*NSEVNYKYINLPPFLQTE*QSI--GYNK 174
E++ S KNV+ L +++S++ + N EV+ IN+ + E + GYNK
Sbjct: 238 EQVESGTKNVYELHWSMSRLLACIKNGEVHKGLINISTYNYLEGSVVVPGYNK 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,594
Number of Sequences: 5004
Number of extensions: 64609
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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