Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m23
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0063 + 11052916-11053106,11054865-11054945,11055314-110553... 57 1e-08
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 32 0.35
07_03_0153 - 14481421-14481506,14481933-14482111,14483046-144831... 30 1.4
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794... 29 3.2
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 29 3.2
02_03_0262 + 17015383-17015619,17017932-17018879 29 3.2
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 29 4.3
01_06_1344 + 36474144-36474296,36474786-36474858,36475309-364754... 29 4.3
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 28 5.6
04_04_1194 - 31643422-31643511,31643695-31643805,31643892-316444... 28 5.6
07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550 28 7.5
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 28 7.5
01_04_0011 + 15067536-15068236,15068283-15068898 28 7.5
07_01_0711 + 5374717-5374992,5375022-5375277,5375317-5375384,537... 27 9.9
06_03_1071 + 27360824-27360994,27361264-27361337,27361431-273614... 27 9.9
>06_02_0063 +
11052916-11053106,11054865-11054945,11055314-11055362,
11055468-11055576,11056356-11056408,11056555-11056617,
11057398-11057745
Length = 297
Score = 56.8 bits (131), Expect = 1e-08
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Frame = +1
Query: 112 PQELNEYLAYVARTGDPVYQWPLVKSLFKEKLLNVITDFYD--TTPNTDIPPYPNVDPFN 285
P+E+ + +A TG + W +K L +L V+ ++ + D +
Sbjct: 74 PEEMRSVIEIIADTGKFWHDWSFLKRLLSLQLKQVLAEYSEGQVVSQEDGQLQNSFSGET 133
Query: 286 YDTMKNSLIERLESFTSAP-FTVQRICELLTYPRKQYNRVDKFMRAIEKNILVVST 450
Y + L + L F P FT+QR+CE+L P+ Y ++ K A+EKN+LV ST
Sbjct: 134 YSELVIWLNDALLRFEEGPPFTLQRLCEILLDPKGTYTKLPKLALALEKNLLVTST 189
>07_03_0572 - 19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 32.3 bits (70), Expect = 0.35
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 382 RKQYNRVDKFMRAIEKNILVVSTREPGIVRQPE--PENGDNAEHLVNGSDNNSEYNVDVE 555
R+++++ + F + ++ + GIV E PENG + NG +NNS ++D
Sbjct: 799 RRRHSKKNGFSYRSQAQNVIRKSNSNGIVENNEHDPENGYAEQFSKNGVENNSHPDIDEN 858
Query: 556 MEDVSWKEATEQRNS 600
+ E T Q S
Sbjct: 859 NNQLGIDEHTSQPGS 873
>07_03_0153 -
14481421-14481506,14481933-14482111,14483046-14483130,
14483301-14483499,14484222-14484292,14484380-14484486,
14484571-14484703,14484870-14485020,14485147-14485249,
14485330-14485438,14485587-14485746,14486293-14486394,
14486892-14487009,14487596-14487750,14487850-14487948,
14488078-14488167
Length = 648
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +1
Query: 238 TPNTDIPPYPN-VDPFNYDTMKNSLI---ERLESFTSAPFTVQRICELLTYPRKQYNRVD 405
TP+T++ PYP+ VD F YD + L E F + + +++ +L+ RK + + D
Sbjct: 145 TPHTNVDPYPDYVDWFEYDGKGHPLSSAPEPKRRFVPSRWEQKKVVKLVRAIRKGWIKFD 204
Query: 406 K 408
K
Sbjct: 205 K 205
>11_06_0227 + 21475954-21476771,21477215-21479144,21479292-21479426,
21480287-21480392,21480560-21480576
Length = 1001
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +1
Query: 373 TYPRKQYNRVDKFMRAIEKNILVVSTREPGIVRQPEPENGDNAEHLVNGSDNNSEYNVDV 552
++P + RV + I + V R G + E N D NS Y
Sbjct: 902 SHPNRPAIRVSRLEEFISLSHFVFQYRMKGDEDNDDEEISAKDHVDGNCDDGNSAYTDQE 961
Query: 553 EMEDVSWKEATEQRNSE---PQPCSSDAHISVDDVET 654
E+ +SW+ +E++ +E P C +D +++ ++ET
Sbjct: 962 ELCLLSWRLVSEEQETESFLPLTCCTD-RLNILEIET 997
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 25 IKLTLRNMENADD--IYGYLEEFSKRKPKSIPQEL 123
IK T + M+ DD IYG +E S+ KP + P EL
Sbjct: 603 IKNTQKKMKMQDDMEIYGMIESGSELKPSACPVEL 637
>02_03_0262 + 17015383-17015619,17017932-17018879
Length = 394
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 511 VNGSDNNSEYNVDVEMEDVSWKEA-TEQRNSEPQPCSSDAHISVD 642
V+ SDNN + ++V+ ED SW + E+ N + QP S D
Sbjct: 97 VSDSDNNDDDQMEVD-EDKSWNQVENEEVNDQQQPADHKVDQSGD 140
>03_01_0300 +
2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 197 LNKLFTRGHWYTGSPVRATYAKYSFNSCGIDLGLRLENSSK*PYISSAFSMFLNVNL 27
L + T WY G V + K + GLRL NSS+ + S ++ V++
Sbjct: 358 LLETLTARQWYLGVDVMGIHVKSGLTAMVYRKGLRLSNSSRQSHTSGEIVNYMAVDV 414
>01_06_1344 +
36474144-36474296,36474786-36474858,36475309-36475481,
36475613-36475667,36475750-36475766
Length = 156
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -2
Query: 329 KDSKRSIKLFFIVS*LKGSTLGYGGISVFGVVS*KSVMTFNNFSLNK----LFTRGHWYT 162
KD+K+S + + + GS++ YGG +G+ K N++ +K + G W+
Sbjct: 92 KDNKQSNQYDSVDTSCFGSSVNYGGRDYYGISGHKQSTESNDYKADKKDPSTDSHGDWWQ 151
Query: 161 GS 156
GS
Sbjct: 152 GS 153
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 460 GIVRQPEPENGDNAEHLVNGSDNNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDAHISV 639
GI+ E ENG+NA + + N + +DV V +A S+ SDAH+
Sbjct: 262 GIIPDKECENGENANEV---NSNVEDSPLDVAAAPVVSPDAVPNDISQHNGFGSDAHLGA 318
Query: 640 D 642
+
Sbjct: 319 E 319
>04_04_1194 -
31643422-31643511,31643695-31643805,31643892-31644406,
31644456-31644756
Length = 338
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 459 RNCASARTRKWRQCGTSR 512
R C S TR WR+CG +
Sbjct: 115 RRCGSGATRSWRRCGKDK 132
>07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550
Length = 461
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 475 PEPENGDNAEHLVNGSDNNSEYNVDVEMEDVSWKEATEQRNSE--PQPCSS 621
P+P D EH G+ N EY +E D++ E + SE PCS+
Sbjct: 171 PKPALADAEEHRAGGAANGKEYE-KIEFPDLNLVEENQIMLSEYIGLPCSA 220
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/96 (23%), Positives = 42/96 (43%)
Frame = +1
Query: 277 PFNYDTMKNSLIERLESFTSAPFTVQRICELLTYPRKQYNRVDKFMRAIEKNILVVSTRE 456
P NY +K +E+ + + F + + T+P+ +Y R + K + + R+
Sbjct: 317 PQNYQVVK---VEQPKMDSLVKFMQNFLEKETTWPKNRYYRPSVKPPILAKKLEQSAQRK 373
Query: 457 PGIVRQPEPENGDNAEHLVNGSDNNSEYNVDVEMED 564
P +P +G ++ H S +S DV MED
Sbjct: 374 PLSAPKPTKGSGSSSSHHDESSPRSS---ADVSMED 406
>01_04_0011 + 15067536-15068236,15068283-15068898
Length = 438
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 261 WRNICIWSSVVKVCDDV*QF 202
W+ IWSS+ +CDD+ F
Sbjct: 365 WKKELIWSSISDMCDDIENF 384
>07_01_0711 +
5374717-5374992,5375022-5375277,5375317-5375384,
5375556-5376287,5377013-5377270
Length = 529
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 373 TYPRKQYNRVDKFMRAIEKNILVVSTREPGIVRQPEPENGDNAEHLVNGSDNNSEYNVDV 552
T PR +Y + K + + R+P +P+ +G ++ H ++++ +VD+
Sbjct: 408 TMPRNRYWKTPVKSSTPAKKLEQPAQRKPSSAPKPKKGSGSSSSH---HDESSARSSVDI 464
Query: 553 EMED 564
MED
Sbjct: 465 SMED 468
>06_03_1071 +
27360824-27360994,27361264-27361337,27361431-27361485,
27361788-27361838,27361935-27362008,27362086-27362134,
27362620-27362704,27362812-27362868,27363001-27363044
Length = 219
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 10 QFSATIKLTLRNMENADDIYGYLEEFSKRKPKSIPQELNEYLAYVARTGD 159
QF A RN D + +L+EF K+ +P E YL + R+G+
Sbjct: 100 QFRALADQIFRN----PDYHKHLKEFRKQYESYVPMEYKVYLKKMKRSGE 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,314,270
Number of Sequences: 37544
Number of extensions: 350327
Number of successful extensions: 805
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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