Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m23
         (654 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    28   0.22 
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    25   1.6  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    25   1.6  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   4.8  

>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = +1

Query: 274 DPFNYDTMKNSLIERLESFTSAPFTVQRICELLTY 378
           DP N ++ +N ++   + F ++ FT++ + +L++Y
Sbjct: 877 DPLNANSERNQILNYFDYFFTSVFTIELLLKLVSY 911


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 259 PYPNVDPFNYDTMKNSLIERLESFTSAPFTVQRICEL 369
           P+P V   N + ++    ER+E  T     +Q IC +
Sbjct: 106 PFPAVTICNMNQLRREAAERIEQNTLEQTVLQSICSI 142


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 259 PYPNVDPFNYDTMKNSLIERLESFTSAPFTVQRICEL 369
           P+P V   N + ++    ER+E  T     +Q IC +
Sbjct: 106 PFPAVTICNMNQLRREAAERIEQNTLEQTVLQSICSI 142


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +1

Query: 184 KSLFKEKLLNVITDFYDTTPNTDIPPYPNVDPFNYDTMKNSLI 312
           +++  ++   V+++ + T PNT  P Y    P  ++ + N  I
Sbjct: 360 RTMTLDEFREVVSELFPTHPNTVWPDYRIDQPREFERITNDEI 402


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.313    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,323
Number of Sequences: 2352
Number of extensions: 15133
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)