Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m23
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17070.1 68418.m02000 expressed protein 53 1e-07
At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3... 31 0.67
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote... 31 0.67
At3g06340.1 68416.m00731 DNAJ heat shock N-terminal domain-conta... 31 0.88
At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR... 29 2.0
At4g02150.1 68417.m00287 importin alpha-2 subunit identical to i... 29 2.0
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 29 3.6
At1g01190.1 68414.m00032 cytochrome P450, putative similar to cy... 29 3.6
At3g58230.1 68416.m06492 hypothetical protein 28 6.2
At5g45070.1 68418.m05527 disease resistance protein (TIR class),... 27 8.2
At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to ... 27 8.2
At3g02940.1 68416.m00289 myb family transcription factor (MYB107... 27 8.2
At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG... 27 8.2
At2g15910.1 68415.m01823 CSL zinc finger domain-containing prote... 27 8.2
At1g51790.1 68414.m05836 leucine-rich repeat protein kinase, put... 27 8.2
At1g17300.1 68414.m02109 expressed protein 27 8.2
>At5g17070.1 68418.m02000 expressed protein
Length = 277
Score = 53.2 bits (122), Expect = 1e-07
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 115 QELNEYLAYVARTGDPVYQWPLVKSLFKEKLLNVITDFYDTTPNTDIPPYPNVDPFNYDT 294
+E+ L VA TG W ++K L V++++ + + +P Y
Sbjct: 60 EEVKRTLEAVASTGKFWQDWEILKGTLSYWLKKVLSEYSEAKMTDEQQKEALGEP--YSE 117
Query: 295 MKNSLIERLESFTSAP-FTVQRICELLTYPRKQYNRVDKFMRAIEKNILVVS 447
+ + L E L F P FT+QR+CE+L R Y ++ K A+EKN+LV S
Sbjct: 118 LVSRLDEALLRFDDGPPFTLQRLCEILLAARSIYPKLSKLALALEKNLLVTS 169
>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
family protein contains Pfam profile: PF05879 root hair
defective 3 GTP-binding protein (RHD3) family
Length = 834
Score = 31.1 bits (67), Expect = 0.67
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +1
Query: 76 LEEFSKRKPKSIPQELNEYLAYVARTGDPVYQWPLVKSLFKEKLLNVITDFYDTTPNTDI 255
L E + K + Q L+E + + G WP ++ L K + +TDF D ++
Sbjct: 453 LSELTANYEKRLTQALSEPVESLFEAGGKE-TWPSIRKLLKRETETAVTDFLDVVTGFEL 511
Query: 256 PPYPNVDPF--NYDTMKNSLIER 318
+ +D N SL+E+
Sbjct: 512 -DHAKIDAMVQNLKNYSQSLVEK 533
>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
/ Rab GTPase activator family protein similar to
SP|P26374 Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) {Homo sapiens};
contains Pfam profile PF00996: GDP dissociation
inhibitor
Length = 563
Score = 31.1 bits (67), Expect = 0.67
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 250 DIPPYPNVDPFNYD 291
DIPPYP +DP NYD
Sbjct: 3 DIPPYPPLDPSNYD 16
>At3g06340.1 68416.m00731 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 673
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 493 DNAEHLVNGSDNNSEYNVDVEME-DVSWKEATEQRNSEPQPCSSDAHISVDDVET 654
D+ LVN + S N+D E E + ++ T + +S + + I VD VET
Sbjct: 352 DDDVDLVNDNGEGSGKNIDTEREKETEEEKQTNENHSSTESIDMNGKIEVDQVET 406
>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
class), putative (RPS4) domain signature TIR-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPS4 (GI:11357255). False intron created at
intron 2 to escape a frameshift in the BAC sequence.
Length = 1217
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 283 NYDTMKNSLIERLESFTSAPFT--VQRICELLTYPRKQYN 396
N+ T + E LE T QR C+LL+Y RK+YN
Sbjct: 912 NHSTFIFTNCENLEQAAKEEITSYAQRKCQLLSYARKRYN 951
>At4g02150.1 68417.m00287 importin alpha-2 subunit identical to
importin alpha-2 subunit (Karyopherin alpha-2 subunit)
(KAP alpha) SP:O04294 from [Arabidopsis thaliana]
Length = 531
Score = 29.5 bits (63), Expect = 2.0
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Frame = +1
Query: 349 VQRICELLTYPRKQYNRVDKFMRAIEKNILVVSTREPGIVRQPEP----ENGDNAEHL-- 510
++ +C+LLT P + V + A+E NILVV E + E + D AE L
Sbjct: 417 IKPLCDLLTCPDLKV--VTVCLEALE-NILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEK 473
Query: 511 ---VNGSDNNSEYNVDVEMEDVSWKEATEQRNSE 603
+ DNN Y+ V++ + W E E+ ++
Sbjct: 474 IENLQSHDNNDIYDKAVKILETFWTEDNEEEGND 507
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 484 ENGDNAEHLVNGSDNNSEYNVDVEMEDVSWKEATEQRNS 600
E+ D +EH+ GSDNN E+ D ED EA E+ +S
Sbjct: 105 EDDDGSEHV--GSDNNEEHGSD---EDSERGEAVEESDS 138
>At1g01190.1 68414.m00032 cytochrome P450, putative similar to
cytochrome P450 SP:O48927 from [Glycine max]
Length = 535
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 477 WLTHNSWLSGTYNQNVLFNCPHKLVNAVVLLTRI 376
W H WL+G Q + F C + +LL+RI
Sbjct: 260 WTDHLPWLAGLDFQQIRFRCSQLVPKVNLLLSRI 293
>At3g58230.1 68416.m06492 hypothetical protein
Length = 153
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 550 VEMEDVSWKEATEQRNSEPQPCSSDAHISVDDV 648
VE V W TE +N E + S A + DDV
Sbjct: 120 VEQRRVLWALETELKNEENEAVSDSARLGFDDV 152
>At5g45070.1 68418.m05527 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 354
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = -2
Query: 452 LVLTTKMFFSIALINLSTRLYCLRGYVSNSQILCTVNGADVKDSKRSIKLFF 297
+ LT K+ S N+ + CL Y+ + + V + K K+FF
Sbjct: 278 VTLTLKVVMSDEAANVKAKKLCLDEYIGENWVDIPVGDFEAPQEKEDAKIFF 329
>At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to
sodium transporter AtHKT1 [Arabidopsis thaliana]
gi|7716474|gb|AAF68393
Length = 506
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 94 VWKILPNNHIYHQHFPCFLMLI*W 23
+W ++P + + FPCFL+L+ W
Sbjct: 231 IWLLIPQVLMGNTLFPCFLVLLIW 254
>At3g02940.1 68416.m00289 myb family transcription factor (MYB107)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 321
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 544 VDVEMEDVSWKEATEQRNSEPQP 612
+D E D WKE EQ SEP P
Sbjct: 296 IDDEASDSYWKEIIEQTCSEPWP 318
>At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG-N)
family protein similar to phosphatidylinositolglycan
class N short form GB:BAA82620 [gi:5631308] [Mus
musculus]
Length = 921
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 314 SIKLFFIVS*LKGSTLGYGG-ISVFGVVS*KSVMTFNNFSLNKLFTR 177
+I FF+V GS + G IS FG+VS + V F+L L+TR
Sbjct: 860 TIHFFFLVK-NTGSWMEIGNSISHFGIVSAQVVFVLLLFALTNLYTR 905
>At2g15910.1 68415.m01823 CSL zinc finger domain-containing protein
contains Pfam PF05207: CSL zinc finger domain
Length = 367
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 547 DVEMEDVSWKEATEQRNSEPQPCSSDAHISVDDV 648
DVE+ED+ W E Q + P PC I+ +D+
Sbjct: 5 DVEIEDMEWNEEI-QAYTYPCPCGDLFQITKEDL 37
>At1g51790.1 68414.m05836 leucine-rich repeat protein kinase,
putative smilar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 881
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 301 NSLIERLESFTSAP-FTVQRICELLTYPRKQYNRVDKFM 414
+SLIERL+SF+ P CE ++ R + N++ F+
Sbjct: 477 SSLIERLDSFSGNPSICSANACEEVSQNRSKKNKLPSFV 515
>At1g17300.1 68414.m02109 expressed protein
Length = 116
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +1
Query: 469 RQPEPENGDNAEHLVNGSDNNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDAHIS 636
++P D+ + G N + + D E V ++ + +R P P SS H+S
Sbjct: 19 KEPLKGEKDSLRRIPRGGSNPIQIDKDQEKASVRGEKDSFRRVPTPTPASSSRHLS 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,477,833
Number of Sequences: 28952
Number of extensions: 303363
Number of successful extensions: 683
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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