Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m12
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   4.0  
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    26   4.0  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   7.0  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    25   7.0  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   7.0  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   9.2  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   9.2  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       25   9.2  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   9.2  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 524 DFRNPPPPGKVCDVDIRSWDPCIEENHFSFHKSSPCIF 637
           D  N   P  VCD+ I S   CI +  +   ++S  IF
Sbjct: 391 DQTNVHEPSNVCDIQISSQSNCIPDPSYERTEASFTIF 428


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -1

Query: 598 LFNARIPASDVYVTDLARGRWIPKVTVENILTRACRL 488
           +++  I ++     D+ R +W P +T+  +L   C L
Sbjct: 73  IYHPNINSNGSICLDILRDQWSPALTISKVLLSICSL 109


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 289 QECHHADCKQSYECCIEYRIE-DQDLRPAFRSAT*NSTSLIIMQKITEFVLKTL 131
           Q CHH      +  C EY++  D  ++P  RS    +++  IM+ I    L+ L
Sbjct: 145 QVCHHPPISAYFYLCPEYKVRIDGVVKP--RSRFLGNSAASIMEGIASIKLQDL 196


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +3

Query: 138 FNTNSVIFCIMMRLVLF*VALLKAGLRSWSSIRYSMQHS*LCLQSAW*HSCNSSLTPE-Y 314
           F   +V F  + R  L   A    G  ++ +  Y ++H+  CL+ AW    N+  T E Y
Sbjct: 8   FQPKNVPFRFLGRSGLKVSAFSLGGWLTYGNEGYDVEHTKNCLKQAWDLGINTFDTAEIY 67

Query: 315 LVSNRSTV 338
              N  TV
Sbjct: 68  SNGNSETV 75


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 388 YISGKGSEAQAWTCTNHTV--LLLETRYSGVNELLQECHH 275
           Y+S +G + Q  TC N  V  LL +TR S +++L+Q  HH
Sbjct: 761 YVSDEGGKDQIITCWNQRVDELLSDTR-SHLHKLVQ--HH 797


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 608 RSDSLQCKDPSFGCLRHRPCQGEVDS*SHS*K-YSDPCLPSALSSCILTRNQSAGLPK 438
           RS   +CK    GC R RPC    D+  +S    SD  +P  +S+    R +  G PK
Sbjct: 339 RSRCSRCKKSKKGCDRQRPCGRCRDAGLNSEDCISDDDMP--VSNARKPRGRGRGRPK 394


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 538 WIPKVTVENILTRACRLPFLLVY 470
           W   + V  IL  AC +PFL VY
Sbjct: 247 WRWGIAVWTILIPACSIPFLAVY 269


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 407 NILVYSLHQREGVGSPSLDLYQSHCTPV 324
           ++ V SL  RE +  P+L L  S CTP+
Sbjct: 60  HLFVMSLITREYMRMPALRLKPSQCTPL 87


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 573 RMSTSQTLPGGGGFLKSQLK 514
           R ST+Q+   GGGFLK   K
Sbjct: 335 RPSTAQSFRKGGGFLKKTFK 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,804
Number of Sequences: 5004
Number of extensions: 63017
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)