Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l13
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0259 + 27955005-27955436,27955685-27955822                       37   0.013
11_01_0355 + 2679561-2680985,2681183-2682295                           32   0.36 
02_05_0998 + 33391021-33391266,33391354-33391502,33391600-333916...    29   1.9  
10_08_0199 + 15721585-15722109,15722135-15722740,15723084-157232...    29   3.3  
11_04_0370 + 16891334-16891469,16891556-16891707,16893277-168936...    28   5.8  
02_04_0468 - 23172561-23174201                                         28   5.8  

>01_06_0259 + 27955005-27955436,27955685-27955822
          Length = 189

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +2

Query: 44  HEALAPISWLEGRWSTTDGRGYYPNIPDFTYHEDLEF 154
           H A+AP+++L G+W   +G G +P I  F Y E+L F
Sbjct: 29  HPAVAPLAFLLGKWRG-EGEGSFPTISPFRYGEELLF 64


>11_01_0355 + 2679561-2680985,2681183-2682295
          Length = 845

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 54  WRPFPGWKAVGPQLMAEDIIR-TYQTLHIMKTWSFSALDSPCTISYRRQGTLKSRRRCIR 230
           W  F G    G + MA+++ +  + +     + SF  L SP + S   + TLK +R    
Sbjct: 637 WLLFQGRDVDGKKAMAQELAKLVFGSSTEFSSISFDELTSPYSDSSSGELTLKRQRSADS 696

Query: 231 NEASFASSL 257
           NE SFA  L
Sbjct: 697 NEHSFAQRL 705


>02_05_0998 +
           33391021-33391266,33391354-33391502,33391600-33391681,
           33391808-33392223,33393659-33393854,33393932-33394074,
           33394153-33394327,33394450-33394503,33394701-33394877,
           33395832-33395944,33396083-33396265,33396570-33396632,
           33396742-33396894,33396922-33396994,33397076-33397206,
           33397285-33397420,33397504-33397581,33398146-33398262,
           33398473-33398535,33398619-33398720
          Length = 949

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 311 EEGLCETETHQVILETVNLSRISFAKPPFVKKIKRVFKLLSDDHLE 448
           + GLC     Q+I+E V L+  +F    FV   K +   LS+ HL+
Sbjct: 107 QPGLCLASISQIIVEKVPLANDAFITSNFVCDSKSMLLGLSNGHLQ 152


>10_08_0199 +
           15721585-15722109,15722135-15722740,15723084-15723273,
           15723907-15724175
          Length = 529

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/94 (21%), Positives = 43/94 (45%)
 Frame = +3

Query: 18  VSVKTCRRFMKLWRPFPGWKAVGPQLMAEDIIRTYQTLHIMKTWSFSALDSPCTISYRRQ 197
           +   TC      WR   G  A GP+++A++ + +++      + + S  DS C     R+
Sbjct: 162 ILANTCILLCYFWRLEGGGGAHGPEVVADEEVTSHRFTPARMSHASSVNDSDCISEPIRR 221

Query: 198 GTLKSRRRCIRNEASFASSLGQMSCLSS*ATTLA 299
               +R   +R+ +  +    Q++  S  A++L+
Sbjct: 222 SESMNRADALRSRSYNSEGDIQVAIRSLRASSLS 255


>11_04_0370 +
           16891334-16891469,16891556-16891707,16893277-16893639,
           16893832-16893929,16893983-16896029
          Length = 931

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +2

Query: 206 EKQTPMHQERGFLRIKPGTNEL---SFVVSHNFG-LTSLEEGLCETETHQVILETVNLSR 373
           E   P HQ    LR+K   NE+   S++ S +F  LT L    C+++    + E  +L  
Sbjct: 640 ESLRPHHQSLKVLRMK-NLNEVNYPSWLGSASFSKLTKLRLENCQSQHLPTLGELPSLKS 698

Query: 374 ISFAKPPFVKKIKRVF 421
           I   +  +V+ I RVF
Sbjct: 699 IDIRQMEYVENIGRVF 714


>02_04_0468 - 23172561-23174201
          Length = 546

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 308 LEEGLCETETHQVILETVNLSRISFAKPPFVKKIKRVFKLLSDDHL-EAT 454
           L +GL +    +       LS + F  PPF+ K KR+ +  S+  L EAT
Sbjct: 216 LADGLPDVPFARAFELATELSLLRFVTPPFIWKAKRLLRAGSERRLVEAT 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,713,415
Number of Sequences: 37544
Number of extensions: 298993
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)