Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11l09
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    45   1e-05
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    36   0.004
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    28   1.4  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    27   2.4  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    27   3.2  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.3  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    26   4.3  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   5.6  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   7.5  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   7.5  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   9.9  

>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 1/169 (0%)
 Frame = +1

Query: 166 MKFRAVMNNSSPIREFSTIVSTISKLSKECVLRIADDMLYFIVSDENTGPAPPVLWCEIP 345
           M+F+  ++N   +   + +V  + K+ + C LR+  + + F++  +        +W  + 
Sbjct: 1   MRFKTRISN---LYTLTRLVQALDKIGRFCWLRLMPETVNFVIVPDFRMTQ---VWSVLE 54

Query: 346 QSVFFSEYQLVGMDETHQDIYLGLNSGNLARSFVSLKNVKSLKMKLTKKQC-PCLTLEIE 522
               F +Y  V        I L +   N  ++  S  N     ++L+KK   P L+L   
Sbjct: 55  VETIFEDY--VVQSNADNVINLEVPIDNFYKALRSAANASDSTVRLSKKNNQPLLSLSTT 112

Query: 523 VPSTTSHQTRQIVHDIPVAVVPWKNWPDFYEPRVPDPDISIELPSLKQL 669
             S  +  +  + H+IPV V+         EP  P+PD  I LP L  L
Sbjct: 113 W-SGRAFGSNIVTHNIPVRVLSQSYVSVIKEPTAPEPDCHIFLPQLNFL 160


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 370 QLVGMDETHQDIYLGLNS-GNLARSFVSLKNVKSLKMKLTKKQCPCLTLEI 519
           QL G DET Q++ L LN  G  A+  V L++V    +KL++K C   +LE+
Sbjct: 719 QLNGNDET-QNLVLALNKFGCFAKEMVCLRDVNDWNIKLSEKLCEICSLEV 768


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -3

Query: 365 SEKNTLCGISHHSTGGAGPVFSSLTMKYNISSAILRTHSLDSFDIVLTIVENSRIGEELF 186
           S+ N L GI H        +F S  + +  S  ++  H L      L+ V N  +G++LF
Sbjct: 75  SKANQLVGIEHVEGSRYALIFLSEKLDFK-SLKVIANHQLTKSSKSLSNVSNKPLGDQLF 133


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 463 LHFSRRQKILRDYPNSILNKCLGEFHPFQPIDIQRKI-HFVVF 338
           LHF+ R+K+L  +   ++      F P  P+ I  K+ HF VF
Sbjct: 7   LHFAIRKKVLAIFIVLLIISAYLGFAPALPVPINDKVCHFFVF 49


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = -1

Query: 517 FPMLGTDTVSLLTSFLMILHFSRRQKILRDYPNSILNKCLGEFHPFQP 374
           F M G+D   +     M+ HF+ + +   DY       CL    P  P
Sbjct: 138 FQMSGSDANEIAYKLAMLHHFNNKPRPTGDYTAEENESCLNNAAPGSP 185


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 421 NSILNKCLGEFHPFQPI 371
           + I NKCL   HPF P+
Sbjct: 88  SEIYNKCLKALHPFYPV 104


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 430 LARSFVSLKNVKSLKMKLTKKQCPCLTLEIE-VPSTTSHQTRQIVHDI 570
           + RS    K+++ L+ + TK+  PC+ LE + V  T + +   I+ +I
Sbjct: 3   IIRSLTRGKSIRLLQKQSTKRTNPCVYLEAKAVEQTPATEFNSILQEI 50


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 430 LARSFVSLKNVK--SLKMKLTKKQCPCLTLEIEVPSTTSHQTRQIVHDIPVAVV 585
           L R  ++  N+K  SLK+ L K     +   + VP    H  R    +IP+A +
Sbjct: 243 LVRGMLTAHNLKAPSLKLPLYKFVKNVIATVVTVPVAELHHIRNAFFNIPIAEI 296


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -1

Query: 436 LRDYPNSILNKCLGEFHPFQPIDIQRKIHFVVFHTIVP 323
           +++ PN+++++  G  H  + +   RKIHFVV + + P
Sbjct: 400 VKNNPNTLISQFYG-LHRVK-LPFGRKIHFVVMNNLFP 435


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +1

Query: 190 NSSPI---REFSTIVSTISKLSKECVLRIADDMLYFI-VSDENTG 312
           NS+PI   +    ++ + SK S +CV+    +ML+F+ V+ +N G
Sbjct: 494 NSAPILCSKFLFPVIESFSKESDDCVVSPVYNMLFFLSVNFQNPG 538


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 421 NSILNKCLGEFHPFQPIDIQRKIHFVVFHTIVP 323
           NSI+N C   FH  Q +D     H  V++ ++P
Sbjct: 143 NSIMNHCWVFFHSEQKVD--ENSHGAVWYKVLP 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,607
Number of Sequences: 5004
Number of extensions: 61208
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)