Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j24
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 131 9e-32
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 46 6e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 44 2e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 43 4e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 42 5e-05
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 42 7e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 42 9e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 41 1e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 2e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 40 3e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 6e-04
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 39 6e-04
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 39 6e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 9e-04
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 38 9e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 38 0.001
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.005
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 0.006
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.008
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.018
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.024
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.024
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.056
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 31 0.098
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.17
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 30 0.30
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.69
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 28 0.91
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.2
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 2.1
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 27 2.1
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.8
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.8
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 3.7
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 3.7
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 6.4
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 8.5
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 8.5
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 131 bits (316), Expect = 9e-32
Identities = 67/144 (46%), Positives = 88/144 (61%)
Frame = +1
Query: 160 MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGK 339
M +R++VG +P D+ FFKG+G+I D + NG+GFVE ED RDA D V + GK
Sbjct: 1 MSETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGK 60
Query: 340 ELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRI 519
E +G R+VVEPARG R + +R P RT +RLIVENLS +
Sbjct: 61 EFMGSRIVVEPARGERRRRENFRESAASKYPR-----------PRRTGFRLIVENLSEDV 109
Query: 520 SWQDLKDYMRQAGEVTYADAHKQH 591
SWQDLKD MR+AGE T+ DAH+++
Sbjct: 110 SWQDLKDVMRKAGEPTFTDAHREN 133
Score = 28.7 bits (61), Expect = 0.69
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGR--IRDILIKN-GYGFVEFEDYRDADDAVYE 327
+ G R+ V L V +DL+ + G D +N G G VEF D +A+
Sbjct: 94 RRTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTS 153
Query: 328 LNGKELLGERVVV 366
LNG+ + G+ V +
Sbjct: 154 LNGEVIKGQAVTL 166
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 45.6 bits (103), Expect = 6e-06
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGR-IR-DILI-----KNGYGFVEFEDYRDADDAVYELN 333
+YV G G+R R+L F+ FG IR DI I + FVE+ED RDA+DA YE++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 334 GKELL--GERVVVEPARGIDRSADRYRRGDR 420
G+ L G + VE A+ S +RG R
Sbjct: 69 GRRLERGGGVLRVEWAKQPPPSGPGSKRGGR 99
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDI------------LIKNGYGFVEFEDYRDADD 315
RV+VG L ++ ++ F+ G +R + L+ +G FV F + D D
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 316 AVYELNGKELLGERVVVEPARGIDRSADRYRRGDRH 423
A+ LNGK L +VV+ AR + + R+ ++
Sbjct: 105 AIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKN 140
Score = 31.5 bits (68), Expect = 0.098
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA 375
G+GFV F + D A+ E+NGK++ +VV+ A
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 42.7 bits (96), Expect = 4e-05
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 163 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNG 336
+ + V+VGGL + E+DL+ F+ FGRI +I I G GFV++ + A+ A+ + G
Sbjct: 295 LNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQG 354
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 42.3 bits (95), Expect = 5e-05
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKE 342
S V+VGGL V E +L+ F+ FG I + I G GFV+F + + A+ A+ +L G
Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYP 362
Query: 343 LLGERV 360
L R+
Sbjct: 363 LGNSRI 368
Score = 31.1 bits (67), Expect = 0.13
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 262 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVV 363
+ GYGFV F D D A+ E+ G ++ G+R +
Sbjct: 226 VSRGYGFVRFTDENDQKSALAEMQG-QICGDRPI 258
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 41.9 bits (94), Expect = 7e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI------KNGYGFVEFEDYRDADDAVYE 327
G +YV + F V E+D+E FF+ +G++ + I G+G+V +DA++A+
Sbjct: 756 GRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL-S 814
Query: 328 LNGKELLGERVV 363
GK+ LG RV+
Sbjct: 815 AAGKQ-LGNRVL 825
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 41.5 bits (93), Expect = 9e-05
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 15/157 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG---------YGFVEFEDYRDADD 315
+YVG LP + DL + F+ FG + KN + F+ FE+ AD+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 316 AVYELNGKELLGERVVVEPARGIDRSADRYRRG-DR-HXXXXXXXXXXXXXXPPTRTEYR 489
A+ LNG G + VE ++R ++ G D+ H E R
Sbjct: 82 AIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKAKIRFSKIEKYTKETR 141
Query: 490 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNE 600
V + R+S +D K+Y + ++ K H E
Sbjct: 142 PTVSEV--RVSTKDKKEYSMNTSNLVQSNPPKVHDKE 176
Score = 31.9 bits (69), Expect = 0.074
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +1
Query: 211 RDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 366
+ LE+ F FGRI+ I GYGFV F +A A+ LNG +R+ V
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 367 EPARGIDRSADRYRR 411
A ++ DR +R
Sbjct: 495 NYA---EKREDRKKR 506
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 239 KPLKNFSKSLSLTPKGRPPTYTRDPTIFQ*TIINYDSK 126
+P NFSK L+ K T ++ PT+F I +++K
Sbjct: 41 EPFGNFSKFHMLSRKKNKSTDSKSPTLF--AFITFENK 76
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.1 bits (92), Expect = 1e-04
Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 12/147 (8%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAVYEL 330
RVYVG L + VR +L++F G + + I N G +E+ +A A+ L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 331 NGKELLGERVVV-----EPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLI 495
+ ++ +G V + + AR S + + Y
Sbjct: 127 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFP 186
Query: 496 VENLSSRISWQDLKDYMRQAGEVTYAD 576
L + WQDLKD RQAG V AD
Sbjct: 187 RTLLPYNVRWQDLKDLFRQAGSVIRAD 213
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 333
+YVG LP+ +R+L F G + I G+G V+FE+ DA ++ +LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 334 G 336
G
Sbjct: 342 G 342
Score = 33.1 bits (72), Expect = 0.032
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 472 TRTEYRLIVENLSSRISWQDLKDYMRQAGEV 564
T+ E R+ V NLS ++ W +LK++M Q G V
Sbjct: 62 TQQERRVYVGNLSYQVRWFELKEFMGQVGNV 92
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.7 bits (91), Expect = 2e-04
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYE 327
+ VY+ L + E++ F FG I + L+K+ G+GFV + ++ A AV E
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 328 LNGKELLGERVVVEPAR 378
LN KE G+++ V A+
Sbjct: 321 LNDKEYKGKKLYVGRAQ 337
Score = 34.3 bits (75), Expect = 0.014
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK-------NGYGFVEFEDYRDADD 315
KM V++ L + + L F FG+I + GYGFV F+ A+
Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANA 223
Query: 316 AVYELNGKELLGERVVV 366
A+ +NG L ++V V
Sbjct: 224 AIEHVNGMLLNDKKVYV 240
Score = 30.3 bits (65), Expect = 0.23
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADD 315
K G +++ L V + L+ F FG I I G+GFV + +A+
Sbjct: 360 KYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANK 419
Query: 316 AVYELNGKELLGERVVVEPAR 378
AV E+N + L G+ + V A+
Sbjct: 420 AVTEMNQRMLAGKPLYVALAQ 440
Score = 29.1 bits (62), Expect = 0.52
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN--GYGFVEFEDYRDADDAVYEL 330
+YVG L V E L + F G + RD + + GY +V F + D + A+ EL
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 331 N 333
N
Sbjct: 142 N 142
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 39.9 bits (89), Expect = 3e-04
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 321
G+ V+VG +P+ V E+ + + F G ++ + GYGF EF D AV
Sbjct: 6 GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65
Query: 322 YELNGKELLGERVVVEPARGIDRSADRYRRGDR 420
+LN EL ++ VE R Y +R
Sbjct: 66 RKLNNSELGPRKIRVEFPSNDPRRNQSYEYTER 98
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 38.7 bits (86), Expect = 6e-04
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 324
S ++V L F ++ DL FF G I+ ++ GYGFV F DA A
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 325 ELNGKELLG 351
EL K+L G
Sbjct: 65 ELKNKKLHG 73
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNGKELLGERVV 363
G+GF++F ++ A A+ LNG+E+ ++++
Sbjct: 540 GFGFMQFISHKYALMALRWLNGREITVKKII 570
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 38.7 bits (86), Expect = 6e-04
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 354
VYV LP + ++L +F FG I + N G + F A+ A+ E+N L G
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLHGV 237
Query: 355 RVVVEPAR 378
R+ + AR
Sbjct: 238 RIQLSWAR 245
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 38.7 bits (86), Expect = 6e-04
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +1
Query: 169 SRVYVGGLPF-GVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 345
SR+++G L + +R+L K FK +G + I++K YGFV+F D A+ G +
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422
Query: 346 LGERVVVE 369
G+++ +E
Sbjct: 423 RGQKLHLE 430
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 38.3 bits (85), Expect = 9e-04
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 330
+++ L + +E D+E+ F +G I I +++N GY FV FE RD A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 331 NGKELLGERVVVEPARG 381
G L G R+VV+ RG
Sbjct: 162 AGLMLNGRRIVVDVERG 178
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 38.3 bits (85), Expect = 9e-04
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNGYGFVEFEDYRDADDAVYELN 333
V++G LP E+++E+ F FG+I IL K FV F + RDA V L+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 37.9 bits (84), Expect = 0.001
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Frame = +1
Query: 160 MVGSRVYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKN-GYGFVEFEDYRDADD 315
++G+ ++VG L V ER L F G++ RD ++ GYGFV ++ + AD
Sbjct: 96 LIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADA 155
Query: 316 AVYELNGKELLGERVVVEPARGIDRSADRYRRGD 417
A+ +N + L+ + + V A R R GD
Sbjct: 156 AIEAMNNQFLMNKPITVSYA--FKREGKGERHGD 187
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.5 bits (83), Expect = 0.001
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 327
++Y+ LP + E + + K FG + LIKN G+ F EF++ DA+ A+
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 328 LNGKELLGERV 360
L+GK+ G ++
Sbjct: 371 LDGKDTYGNKL 381
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.9 bits (79), Expect = 0.005
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGF-GRIRDIL------------IKNGYGFVEFEDYRDADD 315
+YV L F ++ + +K FK G + ++ + G+GFVEF+D A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 316 AVYELNGKELLGERVVVEPA-RGIDRSAD 399
A++ +NG L G ++ ++ + +G+D +A+
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSHQGVDAAAE 709
Score = 35.5 bits (78), Expect = 0.006
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAVYE 327
R+++ L + E DL+ F FG++ + + G+ +++F D DA A E
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 328 LNGKELLGERVVVEPAR 378
L+ K G + V PA+
Sbjct: 384 LDAKPFQGRLLHVLPAK 400
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 35.5 bits (78), Expect = 0.006
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 324
++++VGG+P E + FF FGR+ D + G+GFV +E+ + +
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
Query: 325 E----LNGKELLGERVVVEPARGIDRSADRYRRG 414
+ ++GK + +R P + S DR++ G
Sbjct: 307 QPYITIHGKPVEVKRAT--PKASLRDSHDRHQHG 338
Score = 31.9 bits (69), Expect = 0.074
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
++++GGL + + L +F+ FG + D + G+GF+ F++ + V E
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK----CVNE 219
Query: 328 LNGKELLGERVVVEPARGIDR 390
+ KE + +++P R I R
Sbjct: 220 VMSKEHHLDGKIIDPKRAIPR 240
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.1 bits (77), Expect = 0.008
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 330
VYVG +P+ + E + FK G ++ + GYGF E+ D A AV L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 331 NGKELLGERVVVEPARGIDRSADRYRRGDR 420
N + R+ V+ +AD+ RR D+
Sbjct: 67 NNYDAGTRRLRVD-----FPTADQIRRLDK 91
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.9 bits (74), Expect = 0.018
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 330
+Y+G L F + E D+ F FG DI L+++ G+ F+++ED R AV +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 331 NGKELLGERVVVE 369
+LL V V+
Sbjct: 93 TNVKLLDRLVRVD 105
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.024
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 330
V+V L + R+L FF+ G +RD I G +VEF + D+ A L
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAIAL 300
Query: 331 NGKELLGERVVVE 369
+GK LLG V+V+
Sbjct: 301 SGKRLLGLPVIVQ 313
Score = 32.7 bits (71), Expect = 0.042
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAVYEL 330
R+ V + F + + D++ F+ FG I + ++ G+G++++ + A +A+ ++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 331 NGKELLGERVVV 366
NG +L G + V
Sbjct: 401 NGFDLAGRNMRV 412
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.5 bits (73), Expect = 0.024
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKNGYGFVEFEDYRDADDAVYELN 333
V+VG L V E L F FG I ++ + Y FVEF++ DA +A+ +N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 334 GKELLGERVVVEPA 375
L + V PA
Sbjct: 68 YSILCDRCIRVSPA 81
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.3 bits (70), Expect = 0.056
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN 270
R+YVGGL + DLE F FG + ++ I N
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIIN 38
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 31.5 bits (68), Expect = 0.098
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 229 FKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 378
F GF +R + + G FVE++ R+A A G L G ++ V AR
Sbjct: 197 FSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTFAR 246
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.17
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY--GFVE 288
K+ +++GG+ VRE L F+ FG ++ +++ + Y GF++
Sbjct: 402 KVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLK 447
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.9 bits (64), Expect = 0.30
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYEL 330
+YVG LP G E+ + +F FG + + + K G Y F+EFE D + V E
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESL-DVANVVAET 165
Query: 331 NGKELL 348
LL
Sbjct: 166 MHNYLL 171
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.7 bits (61), Expect = 0.69
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +1
Query: 262 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRR 411
I GYGFV F A A LNG + +R+ V A +R +DR RR
Sbjct: 423 ISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFA---ERKSDRIRR 469
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN------GYGFVEFEDYRDADDAVYEL 330
+ +Y+ LP E D+ FK I + ++++ G GF +D + A+D + +
Sbjct: 384 TNLYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKF 443
Query: 331 N 333
N
Sbjct: 444 N 444
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 1.2
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 330
V+VG L + V ++ L + F+ +G I + GYG+V+FE A AV
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 331 NGKELLGERV 360
KE+ G V
Sbjct: 325 GTKEIDGRMV 334
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNGKELLGERVVV 366
G F +FE+ AD V EL+GK++L V
Sbjct: 92 GLVFADFENVDGADLCVQELDGKQILKNHTFV 123
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 321 HSIICISVIFKFNKTISILDKYVSDSS 241
H+II I +F++ K + KYV+D++
Sbjct: 159 HAIISIGYMFRYLKIVQAAKKYVADNN 185
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDI--LIKNGYGFVEFEDYRDA 309
+YV LP G + F +G ++DI L + V +E A
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSA 48
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 2.8
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Frame = +1
Query: 145 IVYWKMVGSRVYVGGLPFGVRERDLEKFFKGFGR------IRDILIKN-GYGFVEFEDYR 303
++ W R++VG L V + L + F + +RD K G+GFV F+D
Sbjct: 22 LLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSD 81
Query: 304 DADDAVYELNGKELLGERVV 363
A E NGK +G R V
Sbjct: 82 QFLKAWREKNGK-YIGSRPV 100
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +1
Query: 205 RERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYELNGKELLGERV 360
++ DLE F FG+I + + G Y F+EF++ + A +++ + R+
Sbjct: 256 QDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRI 315
Query: 361 VVEPARGIDRSADRY 405
V+ ++ + R Y
Sbjct: 316 HVDFSQSVARYRQYY 330
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 262 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 378
++ Y FV+F++ DA A+ E L G + +E A+
Sbjct: 119 LQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAK 157
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 160 MVGSRVYVGGLPFGVRERDLEKFFKGFGRI 249
++ VY+ GLP V ++E+ FK G I
Sbjct: 107 VINKAVYIQGLPLDVTVDEIEEVFKKCGVI 136
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 327 LVHSIICISVIFKFNKTIS--ILDKYVSDSSKTFEELF 220
L+ + S+ F K +S I+DKY+ +S++ E+F
Sbjct: 181 LLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMF 218
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 KWLDHECMLVVSPLE*ERETWKSSSKVLEESETYLSRMDMV--LLNLKITEMQMM 316
KW +L +SPL E + SSK+ ++ + ++ V + NL I E +++
Sbjct: 392 KWTSQLGVLYLSPLVGEELASQISSKIYDDLHAFYKSLNSVDGISNLTIEEEELV 446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,569
Number of Sequences: 5004
Number of extensions: 39603
Number of successful extensions: 190
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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