Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16c17
(664 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 29 0.040
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 29 0.040
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.0
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 22 6.0
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 22 6.0
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 22 6.0
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 22 6.0
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 6.0
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 6.0
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 6.0
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 6.0
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 6.0
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 6.0
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 7.9
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 7.9
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 29.1 bits (62), Expect = 0.040
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +2
Query: 209 QDILKKMRILDDKIVYALNTSIPTESFKAKIDATAACHDLYS 334
+++LK+ +I+ ++I L+ SI +S ++D + C DL S
Sbjct: 437 EEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLAS 478
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 29.1 bits (62), Expect = 0.040
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +2
Query: 209 QDILKKMRILDDKIVYALNTSIPTESFKAKIDATAACHDLYS 334
+++LK+ +I+ ++I L+ SI +S ++D + C DL S
Sbjct: 143 EEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLAS 184
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 135 NVNSNMYFDSVNQYLFPNNF 76
++NS Y D V + +FP +F
Sbjct: 461 HINSVSYIDKVARIVFPASF 480
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 657 SKNY*FNVYNNN 622
S NY +N YNNN
Sbjct: 86 SNNYNYNNYNNN 97
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 657 SKNY*FNVYNNN 622
S NY +N YNNN
Sbjct: 86 SNNYNYNNYNNN 97
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 657 SKNY*FNVYNNN 622
S NY +N YNNN
Sbjct: 86 SNNYNYNNYNNN 97
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 657 SKNY*FNVYNNN 622
S NY +N YNNN
Sbjct: 86 SNNYNYNNYNNN 97
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 657 SKNY*FNVYNNN 622
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 657 SKNY*FNVYNNN 622
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 657 SKNY*FNVYNNN 622
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 657 SKNY*FNVYNNN 622
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 657 SKNY*FNVYNNN 622
S NY +N YNNN
Sbjct: 319 SNNYNYNNYNNN 330
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 657 SKNY*FNVYNNN 622
S NY +N YNNN
Sbjct: 308 SNNYNYNNYNNN 319
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 7.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 660 TSKNY*FNVYNNNSGKGKTSFSL 592
+S NY + YNNN K +++
Sbjct: 305 SSNNYNYKNYNNNYNSKKLYYNI 327
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 660 TSKNY*FNVYNNNSGKGKTSFSL 592
+S NY + YNNN K +++
Sbjct: 316 SSNNYNYKNYNNNYNSKKLYYNI 338
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,431
Number of Sequences: 438
Number of extensions: 2579
Number of successful extensions: 30
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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