Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14o06
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 273 IKRIYHCIDYTLIIGVDHFI 214
           IK + H I+Y L  G+D ++
Sbjct: 517 IKNVSHVINYDLPKGIDEYV 536


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 144 YLAYLDIYKTYRRKQNQYNK 203
           Y   +D Y +Y+  Q  YNK
Sbjct: 422 YKRIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 144 YLAYLDIYKTYRRKQNQYNK 203
           Y   +D Y +Y+  Q  YNK
Sbjct: 422 YKRIIDYYHSYKMHQKPYNK 441


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 480 IYNQCDPKVLHVANDCQSFGALVGR 406
           +Y +CD  +L + +D Q   ++VGR
Sbjct: 104 VYCKCDDCLLGIVDDYQRNPSVVGR 128


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 549 YLFQTFIHFLISSVCVIRYSVFIIYNQCDPKVLHVANDCQSFGALVG 409
           Y     +HF+ +S+  +  SV    ++  P+V   A+    FG + G
Sbjct: 30  YALNQSLHFVRASLSNLDMSVLECADRSAPRVKKTASAGPIFGVIGG 76


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 549 YLFQTFIHFLISSVCVIRYSVFIIYNQCDPKVLHVANDCQSFGALVG 409
           Y     +HF+ +S+  +  SV    ++  P+V   A+    FG + G
Sbjct: 120 YALNQSLHFVRASLSNLDMSVLECADRSAPRVKKTASAGPIFGVIGG 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,404
Number of Sequences: 438
Number of extensions: 3706
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)