Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14o02
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.47 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.81 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.3  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 142 SGLFYNL*NVCRQQIRIFD*STTFICNQL 56
           SGL  N+ +VC  Q+ +FD +T+ +  Q+
Sbjct: 138 SGLINNVRSVCPPQLLVFDLNTSQLLKQV 166



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 176 YEYIKKLFLRTKYMDDSIDYKDFNRRILL 262
           YEY+  +  R + +    D+ D N RIL+
Sbjct: 373 YEYVLAVSNRIQKVIYGFDFNDVNFRILI 401


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = +2

Query: 458 FGKEVATKIFIEAFEYSYTNTNAISMDKTDEFDFIKQPTLKSLPDA 595
           FG +   +  +++ EY +T      +D+     F+  P  K +P +
Sbjct: 48  FGSDERRQAAMQSGEYDHTKNYPFDVDQWRGMTFVTVPRYKGVPSS 93


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 458 FGKEVATKIFIEAFEYSYTNTNAISMDKTDEFDFI 562
           FG +   +  I++ EY+Y N   I +D+ +   F+
Sbjct: 45  FGSDEKRQAAIQSGEYNYKNNVPIDVDRWNGKTFV 79


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 266 VFKFALNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDN 427
           +FK  +      F +   I  VA  ++ + NPD K     +L +YN  +  + N
Sbjct: 1   MFKMQILTLGVLFNTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRPVMN 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,116
Number of Sequences: 438
Number of extensions: 3284
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)