Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14n02
         (262 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   3.3  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   3.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   4.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   5.8  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    19   7.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 38  IKICPFWTLWSGL 76
           +KI P +T+W  L
Sbjct: 306 VKISPLFTIWGSL 318


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 38 IKICPFWTLWSGL 76
          +KI P +T+W  L
Sbjct: 56 VKISPLFTIWGSL 68


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 130 ADALQHLKFLKVNYNKVVDEH 192
           +D +  L+  K N +KV+D+H
Sbjct: 345 SDRVVALEAEKKNLSKVIDQH 365


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 67  PQRPKRTYFYIHERSGHVL 11
           P     TY YI + SG+ L
Sbjct: 181 PNNCDNTYAYISDLSGYAL 199


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 7/35 (20%), Positives = 19/35 (54%)
 Frame = -2

Query: 150 QMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQNGH 46
           +++  +R G+F D+  +  +   +   L + +NG+
Sbjct: 49  ELVDGMRRGEFPDDHDLQCYTTCIMKLLRTFKNGN 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,762
Number of Sequences: 438
Number of extensions: 1067
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)